1 HisKA#1
182-240 aa · 59 aa · 15.0% of protein
Raw token
HisKA:182:0.0000000000000137:240:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BER41_RS02630
Histidine kinase, Classic
Clostridioides difficile · GCF_001971945
ClassHKTypeClassicLength393 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001971945#BER41_RS02630Stable P2CS identifier used across views.
GenomeGCF_001971945Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length393 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 393 aa (40.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa393 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
293-391 aa · 99 aa · 25.2% of protein
Raw token
HATPase_c:293:9.26e-19:391:100:109- Raw architecture: HisKA:182:0.0000000000000137:240:59:64#HATPase_c:293:9.26e-19:391:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001971945::NZ_MTVW01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span493448-495291Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBER41_000516RefSeq proteinWP_003434702.1
Context group ID
GCF_001971945::NZ_MTVW01000001.1::G00004Context members
BER41_RS02630BER41_RS02635
Partner locus tags
BER41_RS02630BER41_RS02635
Partner old locus tags
BER41_000516BER41_000517
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003434702.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N3EY23Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N3EY23_CLODIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBER41_RS02630Primary locus identifier stored in the genes table.
Old locus tagBER41_000516Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MTVW01000001.1Sequence record reported by the local genomic context database.
Genomic interval493 448-494 629 nt1 182 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span493 448-495 291 ntGCF_001971945::NZ_MTVW01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001971945::NZ_MTVW01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MTVW01000001.1All displayed genes belong to this local TCS context.
Neighborhood span493 448-495 291 nt1 844 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
493 448 nt495 291 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BER41_RS02630GCF_001971945#BER41_RS02630
HKClassicCurrent focus
493 448-494 629 nt · Reverse (-)
BER41_RS02635GCF_001971945#BER41_RS02635
RROmpR
494 629-495 291 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000235905#HMPREF9945_RS15375Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2503376
Simplified PFAM architecture for HKOC_2503376
PFAM domain coverage: 162 / 393 aa (41.2%)
1 aa393 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[179-240] | HATPase_c[292-391]
- Domain count: 2
- Matched identifier: HKOC_2503376
- Positioned domains: HisKA 179-240 ; HATPase_c 292-391
Cluster members and taxonomy
Representative gene: GCF_000235905#HMPREF9945_RS15375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_001971945
AssemblyASM197194v1 · Contighaploid
Genome composition4 093 719 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key