1 HisKA#1
124-189 aa · 66 aa · 19.2% of protein
Raw token
HisKA:124:0.000000341:189:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BER40_RS09675
Histidine kinase, Classic
Clostridioides difficile · GCF_001971925
ClassHKTypeClassicLength343 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001971925#BER40_RS09675Stable P2CS identifier used across views.
GenomeGCF_001971925Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length343 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 343 aa (48.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
241-341 aa · 101 aa · 29.4% of protein
Raw token
HATPase_c:241:5.71e-24:341:101:109- Raw architecture: HisKA:124:0.000000341:189:66:64#HATPase_c:241:5.71e-24:341:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001971925::NZ_MTWB01000003.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span427425-429132Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBER40_001904RefSeq proteinWP_021363597.1
Context group ID
GCF_001971925::NZ_MTWB01000003.1::G00035Context members
BER40_RS09670BER40_RS09675
Partner locus tags
BER40_RS09670BER40_RS09675
Partner old locus tags
BER40_001903BER40_001904
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021363597.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBER40_RS09675Primary locus identifier stored in the genes table.
Old locus tagBER40_001904Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MTWB01000003.1Sequence record reported by the local genomic context database.
Genomic interval428 101-429 132 nt1 032 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span427 425-429 132 ntGCF_001971925::NZ_MTWB01000003.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001971925::NZ_MTWB01000003.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MTWB01000003.1All displayed genes belong to this local TCS context.
Neighborhood span427 425-429 132 nt1 708 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
427 425 nt429 132 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BER40_RS09670GCF_001971925#BER40_RS09670
RROmpR
427 425-428 111 nt · Forward (+)
BER40_RS09675GCF_001971925#BER40_RS09675
HKClassicCurrent focus
428 101-429 132 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448905#QAY_RS09450Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2827962
Simplified PFAM architecture for HKOC_2827962
PFAM domain coverage: 173 / 343 aa (50.4%)
1 aa343 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[124-189] | HATPase_c[236-342]
- Domain count: 2
- Matched identifier: HKOC_2827962
- Positioned domains: HisKA 124-189 ; HATPase_c 236-342
Cluster members and taxonomy
Representative gene: GCF_000448905#QAY_RS09450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_001971925
AssemblyASM197192v1 · Contighaploid
Genome composition4 163 956 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 48 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key