1 HisKA#1
123-170 aa · 48 aa · 14.4% of protein
Raw token
HisKA:123:0.000000862:170:53:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BER39_RS15325
Histidine kinase, Classic
Clostridioides difficile · GCF_001971905
ClassHKTypeClassicLength334 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001971905#BER39_RS15325Stable P2CS identifier used across views.
GenomeGCF_001971905Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length334 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 334 aa (47.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa334 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
216-324 aa · 109 aa · 32.6% of protein
Raw token
HATPase_c:216:6.46e-23:324:109:109- Raw architecture: HisKA:123:0.000000862:170:53:64#HATPase_c:216:6.46e-23:324:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001971905::NZ_MTVV01000004.1::G00047
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2193404-2195110Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBER39_003014RefSeq proteinWP_021362910.1
Context group ID
GCF_001971905::NZ_MTVV01000004.1::G00047Context members
BER39_RS15325BER39_RS15330
Partner locus tags
BER39_RS15325BER39_RS15330
Partner old locus tags
BER39_003014BER39_003015
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021362910.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBER39_RS15325Primary locus identifier stored in the genes table.
Old locus tagBER39_003014Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MTVV01000004.1Sequence record reported by the local genomic context database.
Genomic interval2 193 404-2 194 408 nt1 005 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 193 404-2 195 110 ntGCF_001971905::NZ_MTVV01000004.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001971905::NZ_MTVV01000004.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MTVV01000004.1All displayed genes belong to this local TCS context.
Neighborhood span2 193 404-2 195 110 nt1 707 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 193 404 nt2 195 110 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BER39_RS15325GCF_001971905#BER39_RS15325
HKClassicCurrent focus
2 193 404-2 194 408 nt · Reverse (-)
BER39_RS15330GCF_001971905#BER39_RS15330
RROmpR
2 194 418-2 195 110 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001971905#BER39_RS15325The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2850029
Simplified PFAM architecture for HKOC_2850029
PFAM domain coverage: 109 / 334 aa (32.6%)
1 aa334 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[217-325]
- Domain count: 1
- Matched identifier: HKOC_2850029
- Positioned domains: HATPase_c 217-325
Cluster members and taxonomy
Representative gene: GCF_001971905#BER39_RS15325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_001971905
AssemblyASM197190v1 · Contighaploid
Genome composition4 103 183 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key