1 HisKA#1
457-524 aa · 68 aa · 9.9% of protein
Raw token
HisKA:457:0.0000000000000205:524:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BER39_RS12020
Histidine kinase, Classic
Clostridioides difficile · GCF_001971905
ClassHKTypeClassicLength686 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001971905#BER39_RS12020Stable P2CS identifier used across views.
GenomeGCF_001971905Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length686 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 686 aa (23.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa686 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
570-663 aa · 94 aa · 13.7% of protein
Raw token
HATPase_c:570:0.00000000000182:663:98:109- Raw architecture: HisKA:457:0.0000000000000205:524:68:64#HATPase_c:570:0.00000000000182:663:98:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001971905::NZ_MTVV01000004.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1422408-1425356Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBER39_002357RefSeq proteinWP_021362720.1
Context group ID
GCF_001971905::NZ_MTVV01000004.1::G00037Context members
BER39_RS12020BER39_RS12030
Partner locus tags
BER39_RS12020BER39_RS12030
Partner old locus tags
BER39_002357BER39_002358
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021362720.1Primary protein accession used for annex mappings.
UniProt accessionA0A069AUA2Primary UniProt accession resolved in the annex database.
UniProt IDA0A069AUA2_CLODIDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBER39_RS12020Primary locus identifier stored in the genes table.
Old locus tagBER39_002357Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MTVV01000004.1Sequence record reported by the local genomic context database.
Genomic interval1 422 408-1 424 468 nt2 061 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 422 408-1 425 356 ntGCF_001971905::NZ_MTVV01000004.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001971905::NZ_MTVV01000004.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MTVV01000004.1All displayed genes belong to this local TCS context.
Neighborhood span1 422 408-1 425 356 nt2 949 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 422 408 nt1 425 356 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BER39_RS12020GCF_001971905#BER39_RS12020
HKClassicCurrent focus
1 422 408-1 424 468 nt · Reverse (-)
BER39_RS12030GCF_001971905#BER39_RS12030
RROmpR
1 424 664-1 425 356 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448725#QAW_RS12135Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0801035
Simplified PFAM architecture for HKOC_0801035
PFAM domain coverage: 160 / 686 aa (23.3%)
1 aa686 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[457-524] | HATPase_c[571-662]
- Domain count: 2
- Matched identifier: HKOC_0801035
- Positioned domains: HisKA 457-524 ; HATPase_c 571-662
Cluster members and taxonomy
Representative gene: GCF_000448725#QAW_RS12135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_001971905
AssemblyASM197190v1 · Contighaploid
Genome composition4 103 183 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key