1 Response_reg#1
3-112 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:3:6.07e-31:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BER27_RS03585
Response regulator OmpR family
Clostridioides difficile · GCF_001971865
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001971865#BER27_RS03585Stable P2CS identifier used across views.
GenomeGCF_001971865Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 230 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:151:7.67e-29:227:77:77- Raw architecture: Response_reg:3:6.07e-31:112:111:111#Trans_reg_C:151:7.67e-29:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001971865::NZ_MTVQ01000001.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span700031-701640Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBER27_000701RefSeq proteinWP_022619676.1
Context group ID
GCF_001971865::NZ_MTVQ01000001.1::G00013Context members
BER27_RS03585BER27_RS03590
Partner locus tags
BER27_RS03585BER27_RS03590
Partner old locus tags
BER27_000701BER27_000702
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022619676.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBER27_RS03585Primary locus identifier stored in the genes table.
Old locus tagBER27_000701Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MTVQ01000001.1Sequence record reported by the local genomic context database.
Genomic interval700 031-700 723 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span700 031-701 640 ntGCF_001971865::NZ_MTVQ01000001.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001971865::NZ_MTVQ01000001.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MTVQ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span700 031-701 640 nt1 610 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
700 031 nt701 640 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BER27_RS03585GCF_001971865#BER27_RS03585
RROmpRCurrent focus
700 031-700 723 nt · Forward (+)
BER27_RS03590GCF_001971865#BER27_RS03590
HKClassic
700 723-701 640 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450785#QO7_RS03160Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1202432
Simplified PFAM architecture for RROC_1202432
PFAM domain coverage: 184 / 230 aa (80.0%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[154-227]
- Domain count: 2
- Matched identifier: RROC_1202432
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 154-227 ; Trans_reg_C 154-227
Cluster members and taxonomy
Representative gene: GCF_000450785#QO7_RS03160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_001971865
AssemblyASM197186v1 · Contighaploid
Genome composition4 201 508 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key