1 HisKA#1
95-142 aa · 48 aa · 15.7% of protein
Raw token
HisKA:95:0.00000112:142:53:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BER28_RS15185
Histidine kinase, Classic
Clostridioides difficile · GCF_001971835
ClassHKTypeClassicLength306 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001971835#BER28_RS15185Stable P2CS identifier used across views.
GenomeGCF_001971835Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length306 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 306 aa (51.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa306 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
188-296 aa · 109 aa · 35.6% of protein
Raw token
HATPase_c:188:4.59e-23:296:109:109- Raw architecture: HisKA:95:0.00000112:142:53:64#HATPase_c:188:4.59e-23:296:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001971835::NZ_MTVP01000005.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span276586-278292Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBER28_002990RefSeq proteinWP_021419409.1
Context group ID
GCF_001971835::NZ_MTVP01000005.1::G00048Context members
BER28_RS15185BER28_RS15190
Partner locus tags
BER28_RS15185BER28_RS15190
Partner old locus tags
BER28_002990BER28_002991
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021419409.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBER28_RS15185Primary locus identifier stored in the genes table.
Old locus tagBER28_002990Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MTVP01000005.1Sequence record reported by the local genomic context database.
Genomic interval276 586-277 506 nt921 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span276 586-278 292 ntGCF_001971835::NZ_MTVP01000005.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001971835::NZ_MTVP01000005.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MTVP01000005.1All displayed genes belong to this local TCS context.
Neighborhood span276 586-278 292 nt1 707 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
276 586 nt278 292 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BER28_RS15185GCF_001971835#BER28_RS15185
HKClassicCurrent focus
276 586-277 506 nt · Reverse (-)
BER28_RS15190GCF_001971835#BER28_RS15190
RROmpR
277 600-278 292 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001484885#CD26A54R_RS14740Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2881356
Simplified PFAM architecture for HKOC_2881356
PFAM domain coverage: 109 / 306 aa (35.6%)
1 aa306 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[189-297]
- Domain count: 1
- Matched identifier: HKOC_2881356
- Positioned domains: HATPase_c 189-297
Cluster members and taxonomy
Representative gene: GCF_001484885#CD26A54R_RS14740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_001971835
AssemblyASM197183v1 · Contighaploid
Genome composition4 189 946 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key