1 HAMP#1
192-259 aa · 68 aa · 14.0% of protein
Raw token
HAMP:192:0.000000000106:259:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BJR06_RS24035
Histidine kinase, Classic
Bacillus cereus · GCF_001901245
ClassHKTypeClassicLength487 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001901245#BJR06_RS24035Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length487 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 487 aa (50.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa487 aa
Domain-by-domain annotation3 items
2 HisKA#2
265-330 aa · 66 aa · 13.6% of protein
Raw token
HisKA:265:0.0000000000000424:330:66:643 HATPase_c#3
377-487 aa · 111 aa · 22.8% of protein
Raw token
HATPase_c:377:3.83e-33:487:111:109- Raw architecture: HAMP:192:0.000000000106:259:70:69#HisKA:265:0.0000000000000424:330:66:64#HATPase_c:377:3.83e-33:487:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001901245::NZ_MPOM01000010.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span158087-160287Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBJR06_23415RefSeq proteinWP_073517330.1
Context group ID
GCF_001901245::NZ_MPOM01000010.1::G00007Context members
BJR06_RS24030BJR06_RS24035
Partner locus tags
BJR06_RS24030BJR06_RS24035
Partner old locus tags
BJR06_23410BJR06_23415
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_073517330.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV4S1Z2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV4S1Z2_9BACIDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBJR06_RS24035Primary locus identifier stored in the genes table.
Old locus tagBJR06_23415Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPOM01000010.1Sequence record reported by the local genomic context database.
Genomic interval158 824-160 287 nt1 464 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span158 087-160 287 ntGCF_001901245::NZ_MPOM01000010.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001901245::NZ_MPOM01000010.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPOM01000010.1All displayed genes belong to this local TCS context.
Neighborhood span158 087-160 287 nt2 201 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
158 087 nt160 287 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BJR06_RS24030GCF_001901245#BJR06_RS24030
RROmpR
158 087-158 758 nt · Forward (+)
BJR06_RS24035GCF_001901245#BJR06_RS24035
HKClassicCurrent focus
158 824-160 287 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001901245#BJR06_RS24035The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1560548
Simplified PFAM architecture for HKOC_1560548
PFAM domain coverage: 225 / 487 aa (46.2%)
1 aa487 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[210-259] | HisKA[266-330] | HATPase_c[377-486]
- Domain count: 3
- Matched identifier: HKOC_1560548
- Positioned domains: HAMP 210-259 ; HisKA 266-330 ; HATPase_c 377-486
Cluster members and taxonomy
Representative gene: GCF_001901245#BJR06_RS24035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_001901245
AssemblyASM190124v1 · Contighaploid
Genome composition5 926 588 bp · 35,5% GCBacillus cereus
Signal transduction countsGenes 111 · HK 59 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key