1 Response_reg#1
4-111 aa · 108 aa · 49.1% of protein
Raw token
Response_reg:4:2.1e-34:111:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BJR06_RS08250
Response regulator OmpR family
Bacillus cereus · GCF_001901245
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001901245#BJR06_RS08250Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 220 aa (83.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-218 aa · 75 aa · 34.1% of protein
Raw token
Trans_reg_C:144:6.91e-23:218:77:77- Raw architecture: Response_reg:4:2.1e-34:111:110:111#Trans_reg_C:144:6.91e-23:218:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001901245::NZ_MPOM01000002.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1109642-1111653Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBJR06_08075RefSeq proteinWP_073516052.1
Context group ID
GCF_001901245::NZ_MPOM01000002.1::G00029Context members
BJR06_RS08250BJR06_RS08255
Partner locus tags
BJR06_RS08250BJR06_RS08255
Partner old locus tags
BJR06_08075BJR06_08080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_073516052.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV4RUB2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV4RUB2_9BACIDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBJR06_RS08250Primary locus identifier stored in the genes table.
Old locus tagBJR06_08075Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPOM01000002.1Sequence record reported by the local genomic context database.
Genomic interval1 109 642-1 110 304 nt663 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 109 642-1 111 653 ntGCF_001901245::NZ_MPOM01000002.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001901245::NZ_MPOM01000002.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPOM01000002.1All displayed genes belong to this local TCS context.
Neighborhood span1 109 642-1 111 653 nt2 012 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 109 642 nt1 111 653 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BJR06_RS08250GCF_001901245#BJR06_RS08250
RROmpRCurrent focus
1 109 642-1 110 304 nt · Forward (+)
BJR06_RS08255GCF_001901245#BJR06_RS08255
HKClassic
1 110 292-1 111 653 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001901245#BJR06_RS08250The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1729087
Simplified PFAM architecture for RROC_1729087
PFAM domain coverage: 181 / 220 aa (82.3%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[145-217]
- Domain count: 2
- Matched identifier: RROC_1729087
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; Trans_reg_C 145-217 ; Trans_reg_C 145-217
Cluster members and taxonomy
Representative gene: GCF_001901245#BJR06_RS08250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_001901245
AssemblyASM190124v1 · Contighaploid
Genome composition5 926 588 bp · 35,5% GCBacillus cereus
Signal transduction countsGenes 111 · HK 59 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key