1 Response_reg#1
4-114 aa · 111 aa · 51.2% of protein
Raw token
Response_reg:4:4.17e-19:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAU29_RS02370
Response regulator NarL family
Bacillus sp. P14-1 · GCF_001884215
ClassRRTypeNarLLength217 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001884215#BAU29_RS02370Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 217 aa (75.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
155-206 aa · 52 aa · 24.0% of protein
Raw token
HTH_LUXR:155:0.00000000000000346:206:52:58- Raw architecture: Response_reg:4:4.17e-19:114:111:111#HTH_LUXR:155:0.00000000000000346:206:52:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001884215::NZ_MAOH01000001.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span470482-472990Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAU29_02335RefSeq proteinWP_000616900.1
Context group ID
GCF_001884215::NZ_MAOH01000001.1::G00006Context members
BAU29_RS02370BAU29_RS02375
Partner locus tags
BAU29_RS02370BAU29_RS02375
Partner old locus tags
BAU29_02335BAU29_02340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000616900.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAU29_RS02370Primary locus identifier stored in the genes table.
Old locus tagBAU29_02335Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MAOH01000001.1Sequence record reported by the local genomic context database.
Genomic interval470 482-471 135 nt654 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span470 482-472 990 ntGCF_001884215::NZ_MAOH01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001884215::NZ_MAOH01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MAOH01000001.1All displayed genes belong to this local TCS context.
Neighborhood span470 482-472 990 nt2 509 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
470 482 nt472 990 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAU29_RS02370GCF_001884215#BAU29_RS02370
RRNarLCurrent focus
470 482-471 135 nt · Reverse (-)
BAU29_RS02375GCF_001884215#BAU29_RS02375
HKClassic
471 167-472 990 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000971535#OA45_RS06000Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1850186
Simplified PFAM architecture for RROC_1850186
PFAM domain coverage: 163 / 217 aa (75.1%)
1 aa217 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-114] | GerE[154-205]
- Domain count: 2
- Matched identifier: RROC_1850186
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; GerE 154-205 ; GerE 154-205
Cluster members and taxonomy
Representative gene: GCF_000971535#OA45_RS06000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 866 317 · GCF_001884215
AssemblyASM188421v1 · Contighaploid
Genome composition5 376 339 bp · 35,0% GCBacillus sp. P14-1
Signal transduction countsGenes 97 · HK 50 · RR 47CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key