1 Response_reg#1
6-114 aa · 109 aa · 46.8% of protein
Raw token
Response_reg:6:3.42e-34:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAU23_RS20935
Response regulator OmpR family
Bacillus nitratireducens · GCF_001884135
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001884135#BAU23_RS20935Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-230 aa · 78 aa · 33.5% of protein
Raw token
Trans_reg_C:153:4.16e-34:230:78:77- Raw architecture: Response_reg:6:3.42e-34:114:110:111#Trans_reg_C:153:4.16e-34:230:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001884135::NZ_MAOC01000078.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span91539-93986Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAU23_21560RefSeq proteinWP_000274573.1
Context group ID
GCF_001884135::NZ_MAOC01000078.1::G00052Context members
BAU23_RS20935BAU23_RS20940
Partner locus tags
BAU23_RS20935BAU23_RS20940
Partner old locus tags
BAU23_21560BAU23_21565
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000274573.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAU23_RS20935Primary locus identifier stored in the genes table.
Old locus tagBAU23_21560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MAOC01000078.1Sequence record reported by the local genomic context database.
Genomic interval91 539-92 240 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span91 539-93 986 ntGCF_001884135::NZ_MAOC01000078.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001884135::NZ_MAOC01000078.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MAOC01000078.1All displayed genes belong to this local TCS context.
Neighborhood span91 539-93 986 nt2 448 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
91 539 nt93 986 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAU23_RS20935GCF_001884135#BAU23_RS20935
RROmpRCurrent focus
91 539-92 240 nt · Forward (+)
BAU23_RS20940GCF_001884135#BAU23_RS20940
HKClassic
92 250-93 986 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884135#BAU23_RS20935The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1086944
Simplified PFAM architecture for RROC_1086944
PFAM domain coverage: 187 / 233 aa (80.3%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-230]
- Domain count: 2
- Matched identifier: RROC_1086944
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 154-230 ; Trans_reg_C 154-230
Cluster members and taxonomy
Representative gene: GCF_001884135#BAU23_RS20935
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_001884135
AssemblyASM188413v1 · Contighaploid
Genome composition5 487 699 bp · 35,5% GCBacillus nitratireducens
Signal transduction countsGenes 124 · HK 68 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key