1 HAMP#1
56-125 aa · 70 aa · 19.6% of protein
Raw token
HAMP:56:0.00000000177:125:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAU23_RS18895
Histidine kinase, Classic
Bacillus nitratireducens · GCF_001884135
ClassHKTypeClassicLength358 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001884135#BAU23_RS18895Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length358 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage232 / 358 aa (64.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa358 aa
Domain-by-domain annotation3 items
2 HisKA#2
137-200 aa · 64 aa · 17.9% of protein
Raw token
HisKA:137:0.0000000000000014:200:64:643 HATPase_c#3
250-347 aa · 98 aa · 27.4% of protein
Raw token
HATPase_c:250:8.57e-16:347:98:109- Raw architecture: HAMP:56:0.00000000177:125:70:69#HisKA:137:0.0000000000000014:200:64:64#HATPase_c:250:8.57e-16:347:98:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001884135::NZ_MAOC01000073.1::G00047
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16105-17864Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAU23_19590RefSeq proteinWP_071735002.1
Context group ID
GCF_001884135::NZ_MAOC01000073.1::G00047Context members
BAU23_RS18895BAU23_RS18900
Partner locus tags
BAU23_RS18895BAU23_RS18900
Partner old locus tags
BAU23_19590BAU23_19595
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_071735002.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAU23_RS18895Primary locus identifier stored in the genes table.
Old locus tagBAU23_19590Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MAOC01000073.1Sequence record reported by the local genomic context database.
Genomic interval16 105-17 181 nt1 077 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span16 105-17 864 ntGCF_001884135::NZ_MAOC01000073.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001884135::NZ_MAOC01000073.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MAOC01000073.1All displayed genes belong to this local TCS context.
Neighborhood span16 105-17 864 nt1 760 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 105 nt17 864 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAU23_RS18895GCF_001884135#BAU23_RS18895
HKClassicCurrent focus
16 105-17 181 nt · Reverse (-)
BAU23_RS18900GCF_001884135#BAU23_RS18900
RROmpR
17 178-17 864 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884135#BAU23_RS18895The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2759746
Simplified PFAM architecture for HKOC_2759746
PFAM domain coverage: 213 / 358 aa (59.5%)
1 aa358 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[80-124] | HisKA[137-200] | HATPase_c[250-353]
- Domain count: 3
- Matched identifier: HKOC_2759746
- Positioned domains: HAMP 80-124 ; HisKA 137-200 ; HATPase_c 250-353
Cluster members and taxonomy
Representative gene: GCF_001884135#BAU23_RS18895
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_001884135
AssemblyASM188413v1 · Contighaploid
Genome composition5 487 699 bp · 35,5% GCBacillus nitratireducens
Signal transduction countsGenes 124 · HK 68 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key