1 HAMP#1
164-233 aa · 70 aa · 14.0% of protein
Raw token
HAMP:164:0.00000000000000322:233:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAU23_RS11850
Histidine kinase, Classic
Bacillus nitratireducens · GCF_001884135
ClassHKTypeClassicLength500 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001884135#BAU23_RS11850Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length500 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 500 aa (49.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa500 aa
Domain-by-domain annotation3 items
2 HisKA#2
258-323 aa · 66 aa · 13.2% of protein
Raw token
HisKA:258:0.000000000000208:323:66:643 HATPase_c#3
369-480 aa · 112 aa · 22.4% of protein
Raw token
HATPase_c:369:1.15e-16:480:113:109- Raw architecture: HAMP:164:0.00000000000000322:233:70:69#HisKA:258:0.000000000000208:323:66:64#HATPase_c:369:1.15e-16:480:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001884135::NZ_MAOC01000027.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span125405-127565Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAU23_13620RefSeq proteinWP_071734503.1
Context group ID
GCF_001884135::NZ_MAOC01000027.1::G00025Context members
BAU23_RS11845BAU23_RS11850
Partner locus tags
BAU23_RS11845BAU23_RS11850
Partner old locus tags
BAU23_13615BAU23_13620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_071734503.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAU23_RS11850Primary locus identifier stored in the genes table.
Old locus tagBAU23_13620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MAOC01000027.1Sequence record reported by the local genomic context database.
Genomic interval126 063-127 565 nt1 503 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span125 405-127 565 ntGCF_001884135::NZ_MAOC01000027.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001884135::NZ_MAOC01000027.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MAOC01000027.1All displayed genes belong to this local TCS context.
Neighborhood span125 405-127 565 nt2 161 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
125 405 nt127 565 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAU23_RS11845GCF_001884135#BAU23_RS11845
RROmpR
125 405-126 070 nt · Forward (+)
BAU23_RS11850GCF_001884135#BAU23_RS11850
HKClassicCurrent focus
126 063-127 565 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884135#BAU23_RS11850The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1475689
Simplified PFAM architecture for HKOC_1475689
PFAM domain coverage: 229 / 500 aa (45.8%)
1 aa500 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[181-233] | HisKA[259-323] | HATPase_c[370-480]
- Domain count: 3
- Matched identifier: HKOC_1475689
- Positioned domains: HAMP 181-233 ; HisKA 259-323 ; HATPase_c 370-480
Cluster members and taxonomy
Representative gene: GCF_001884135#BAU23_RS11850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_001884135
AssemblyASM188413v1 · Contighaploid
Genome composition5 487 699 bp · 35,5% GCBacillus nitratireducens
Signal transduction countsGenes 124 · HK 68 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key