1 HisKA_3#1
177-244 aa · 68 aa · 18.6% of protein
Raw token
HisKA_3:177:1.41e-19:244:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAU23_RS06155
Histidine kinase, Classic
Bacillus nitratireducens · GCF_001884135
ClassHKTypeClassicLength366 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001884135#BAU23_RS06155Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length366 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage145 / 366 aa (39.6%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa366 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
289-365 aa · 77 aa · 21.0% of protein
Raw token
HATPase_c:289:0.0000000000853:365:97:109- Raw architecture: HisKA_3:177:1.41e-19:244:68:68#HATPase_c:289:0.0000000000853:365:97:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001884135::NZ_MAOC01000020.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span123509-125252Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAU23_08370RefSeq proteinWP_000397640.1
Context group ID
GCF_001884135::NZ_MAOC01000020.1::G00013Context members
BAU23_RS06150BAU23_RS06155
Partner locus tags
BAU23_RS06150BAU23_RS06155
Partner old locus tags
BAU23_08365BAU23_08370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000397640.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAU23_RS06155Primary locus identifier stored in the genes table.
Old locus tagBAU23_08370Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MAOC01000020.1Sequence record reported by the local genomic context database.
Genomic interval124 152-125 252 nt1 101 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span123 509-125 252 ntGCF_001884135::NZ_MAOC01000020.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001884135::NZ_MAOC01000020.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MAOC01000020.1All displayed genes belong to this local TCS context.
Neighborhood span123 509-125 252 nt1 744 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
123 509 nt125 252 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAU23_RS06150GCF_001884135#BAU23_RS06150
RRNarL
123 509-124 147 nt · Forward (+)
BAU23_RS06155GCF_001884135#BAU23_RS06155
HKClassicCurrent focus
124 152-125 252 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884135#BAU23_RS06155The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2712919
Simplified PFAM architecture for HKOC_2712919
PFAM domain coverage: 144 / 366 aa (39.3%)
1 aa366 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[177-243] | HATPase_c[289-365]
- Domain count: 2
- Matched identifier: HKOC_2712919
- Positioned domains: HisKA_3 177-243 ; HATPase_c 289-365
Cluster members and taxonomy
Representative gene: GCF_001884135#BAU23_RS06155
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_001884135
AssemblyASM188413v1 · Contighaploid
Genome composition5 487 699 bp · 35,5% GCBacillus nitratireducens
Signal transduction countsGenes 124 · HK 68 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key