1 HAMP#1
289-357 aa · 69 aa · 11.4% of protein
Raw token
HAMP:289:0.0000000000147:357:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAU23_RS04685
Histidine kinase, Classic
Bacillus nitratireducens · GCF_001884135
ClassHKTypeClassicLength605 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001884135#BAU23_RS04685Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length605 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage222 / 605 aa (36.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa605 aa
Domain-by-domain annotation3 items
2 HisKA#2
383-446 aa · 64 aa · 10.6% of protein
Raw token
HisKA:383:4.92e-17:446:64:643 HATPase_c#3
491-579 aa · 89 aa · 14.7% of protein
Raw token
HATPase_c:491:1.22e-23:579:89:109- Raw architecture: HAMP:289:0.0000000000147:357:69:69#HisKA:383:4.92e-17:446:64:64#HATPase_c:491:1.22e-23:579:89:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001884135::NZ_MAOC01000018.1::G00009
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span4382-6199Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAU23_06925RefSeq proteinWP_016129015.1
Context group ID
GCF_001884135::NZ_MAOC01000018.1::G00009Context members
BAU23_RS04685
Partner locus tags
BAU23_RS04685
Partner old locus tags
BAU23_06925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016129015.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAU23_RS04685Primary locus identifier stored in the genes table.
Old locus tagBAU23_06925Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MAOC01000018.1Sequence record reported by the local genomic context database.
Genomic interval4 382-6 199 nt1 818 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 382-6 199 ntGCF_001884135::NZ_MAOC01000018.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001884135::NZ_MAOC01000018.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MAOC01000018.1All displayed genes belong to this local TCS context.
Neighborhood span4 382-6 199 nt1 818 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 382 nt6 199 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BAU23_RS04685GCF_001884135#BAU23_RS04685
HKClassicCurrent focus
4 382-6 199 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884135#BAU23_RS04685The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1028981
Simplified PFAM architecture for HKOC_1028981
PFAM domain coverage: 211 / 605 aa (34.9%)
1 aa605 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[307-356] | HisKA[383-446] | HATPase_c[493-589]
- Domain count: 3
- Matched identifier: HKOC_1028981
- Positioned domains: HAMP 307-356 ; HisKA 383-446 ; HATPase_c 493-589
Cluster members and taxonomy
Representative gene: GCF_001884135#BAU23_RS04685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_001884135
AssemblyASM188413v1 · Contighaploid
Genome composition5 487 699 bp · 35,5% GCBacillus nitratireducens
Signal transduction countsGenes 124 · HK 68 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key