1 Response_reg#1
5-114 aa · 110 aa · 47.6% of protein
Raw token
Response_reg:5:1.58e-38:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAQ48_RS17830
Response regulator OmpR family
Bacillus luti · GCF_001884105
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001884105#BAQ48_RS17830Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 231 aa (79.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-229 aa · 74 aa · 32.0% of protein
Raw token
Trans_reg_C:156:6.16e-31:229:74:77- Raw architecture: Response_reg:5:1.58e-38:114:111:111#Trans_reg_C:156:6.16e-31:229:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001884105::NZ_MACI01000070.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span38454-40296Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAQ48_20015RefSeq proteinWP_071712187.1
Context group ID
GCF_001884105::NZ_MACI01000070.1::G00049Context members
BAQ48_RS17830BAQ48_RS17835
Partner locus tags
BAQ48_RS17830BAQ48_RS17835
Partner old locus tags
BAQ48_20015BAQ48_20020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_071712187.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAQ48_RS17830Primary locus identifier stored in the genes table.
Old locus tagBAQ48_20015Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MACI01000070.1Sequence record reported by the local genomic context database.
Genomic interval38 454-39 149 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span38 454-40 296 ntGCF_001884105::NZ_MACI01000070.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001884105::NZ_MACI01000070.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MACI01000070.1All displayed genes belong to this local TCS context.
Neighborhood span38 454-40 296 nt1 843 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
38 454 nt40 296 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAQ48_RS17830GCF_001884105#BAQ48_RS17830
RROmpRCurrent focus
38 454-39 149 nt · Forward (+)
BAQ48_RS17835GCF_001884105#BAQ48_RS17835
HKClassic
39 139-40 296 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884105#BAQ48_RS17830The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1164563
Simplified PFAM architecture for RROC_1164563
PFAM domain coverage: 184 / 231 aa (79.7%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[155-228]
- Domain count: 2
- Matched identifier: RROC_1164563
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 155-228 ; Trans_reg_C 155-228
Cluster members and taxonomy
Representative gene: GCF_001884105#BAQ48_RS17830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 191 · GCF_001884105
AssemblyASM188410v1 · Contighaploid
Genome composition5 094 423 bp · 35,5% GCBacillus luti
Signal transduction countsGenes 100 · HK 54 · RR 46CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key