1 HAMP#1
63-130 aa · 68 aa · 18.5% of protein
Raw token
HAMP:63:0.000000493:130:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A9489_RS00920
Histidine kinase, Classic
Bacillus thuringiensis · GCF_001883875
ClassHKTypeClassicLength368 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001883875#A9489_RS00920Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length368 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 368 aa (67.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa368 aa
Domain-by-domain annotation3 items
2 HisKA#2
141-208 aa · 68 aa · 18.5% of protein
Raw token
HisKA:141:0.000000000000504:208:68:643 HATPase_c#3
253-364 aa · 112 aa · 30.4% of protein
Raw token
HATPase_c:253:4.84e-26:364:113:109- Raw architecture: HAMP:63:0.000000493:130:68:69#HisKA:141:0.000000000000504:208:68:64#HATPase_c:253:4.84e-26:364:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001883875::NZ_LZRA01000006.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span70285-72082Genomic interval covered by the local TCS group.
Identifiers
Old locus tagA9489_04385RefSeq proteinWP_000002599.1
Context group ID
GCF_001883875::NZ_LZRA01000006.1::G00004Context members
A9489_RS00920A9489_RS00925
Partner locus tags
A9489_RS00920A9489_RS00925
Partner old locus tags
A9489_04385A9489_04390
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000002599.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW5KV87Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW5KV87_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA9489_RS00920Primary locus identifier stored in the genes table.
Old locus tagA9489_04385Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LZRA01000006.1Sequence record reported by the local genomic context database.
Genomic interval70 285-71 391 nt1 107 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span70 285-72 082 ntGCF_001883875::NZ_LZRA01000006.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001883875::NZ_LZRA01000006.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LZRA01000006.1All displayed genes belong to this local TCS context.
Neighborhood span70 285-72 082 nt1 798 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
70 285 nt72 082 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
A9489_RS00920GCF_001883875#A9489_RS00920
HKClassicCurrent focus
70 285-71 391 nt · Reverse (-)
A9489_RS00925GCF_001883875#A9489_RS00925
RROmpR
71 384-72 082 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291035#ICE_RS20350Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2698186
Simplified PFAM architecture for HKOC_2698186
PFAM domain coverage: 222 / 368 aa (60.3%)
1 aa368 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[85-129] | HisKA[142-207] | HATPase_c[253-363]
- Domain count: 3
- Matched identifier: HKOC_2698186
- Positioned domains: HAMP 85-129 ; HisKA 142-207 ; HATPase_c 253-363
Cluster members and taxonomy
Representative gene: GCF_000291035#ICE_RS20350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_001883875
AssemblyASM188387v1 · Contighaploid
Genome composition5 814 538 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 119 · HK 65 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key