1 HisKA_3#1
215-278 aa · 64 aa · 14.2% of protein
Raw token
HisKA_3:215:0.0000000000000132:278:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BFS26_RS10850
Histidine kinase, Classic
Bifidobacterium longum subsp. suis · GCF_001870705
ClassHKTypeClassicLength450 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001870705#BFS26_RS10850Stable P2CS identifier used across views.
GenomeGCF_001870705Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length450 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 450 aa (40.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa450 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
325-443 aa · 119 aa · 26.4% of protein
Raw token
HATPase_c:325:0.0000000145:443:120:109- Raw architecture: HisKA_3:215:0.0000000000000132:278:64:68#HATPase_c:325:0.0000000145:443:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001870705::NZ_MOAE01000045.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span50096-52101Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBFS26_10860RefSeq proteinWP_071475353.1
Context group ID
GCF_001870705::NZ_MOAE01000045.1::G00015Context members
BFS26_RS10845BFS26_RS10850
Partner locus tags
BFS26_RS10845BFS26_RS10850
Partner old locus tags
BFS26_10855BFS26_10860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_071475353.1Primary protein accession used for annex mappings.
UniProt accessionA0A1S2VRM2Primary UniProt accession resolved in the annex database.
UniProt IDA0A1S2VRM2_BIFLNDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBFS26_RS10850Primary locus identifier stored in the genes table.
Old locus tagBFS26_10860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOAE01000045.1Sequence record reported by the local genomic context database.
Genomic interval50 749-52 101 nt1 353 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span50 096-52 101 ntGCF_001870705::NZ_MOAE01000045.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001870705::NZ_MOAE01000045.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOAE01000045.1All displayed genes belong to this local TCS context.
Neighborhood span50 096-52 101 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 096 nt52 101 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BFS26_RS10845GCF_001870705#BFS26_RS10845
RRNarL
50 096-50 749 nt · Reverse (-)
BFS26_RS10850GCF_001870705#BFS26_RS10850
HKClassicCurrent focus
50 749-52 101 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001870705#BFS26_RS10850The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1963781
Simplified PFAM architecture for HKOC_1963781
PFAM domain coverage: 66 / 450 aa (14.7%)
1 aa450 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[215-280]
- Domain count: 1
- Matched identifier: HKOC_1963781
- Positioned domains: HisKA_3 215-280
Cluster members and taxonomy
Representative gene: GCF_001870705#BFS26_RS10850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 695 · GCF_001870705
AssemblyASM187070v1 · Scaffoldhaploid
Genome composition2 602 875 bp · 60,0% GCBifidobacterium longum subsp. suis
Signal transduction countsGenes 29 · HK 11 · RR 16CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key