1 Response_reg#1
43-100 aa · 58 aa · 36.5% of protein
Raw token
Response_reg:43:0.0000328:100:58:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BFS26_RS08435
Response regulator, CheY family
Bifidobacterium longum subsp. suis · GCF_001870705
ClassRRTypeCheYLength159 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001870705#BFS26_RS08435Stable P2CS identifier used across views.
GenomeGCF_001870705Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length159 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage58 / 159 aa (36.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa159 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:43:0.0000328:100:58:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001870705::NZ_MOAE01000039.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span88479-88958Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBFS26_08440RefSeq proteinWP_071475089.1
Context group ID
GCF_001870705::NZ_MOAE01000039.1::G00011Context members
BFS26_RS08435
Partner locus tags
BFS26_RS08435
Partner old locus tags
BFS26_08440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_071475089.1Primary protein accession used for annex mappings.
UniProt accessionA0A1S2VUB2Primary UniProt accession resolved in the annex database.
UniProt IDA0A1S2VUB2_BIFLNDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBFS26_RS08435Primary locus identifier stored in the genes table.
Old locus tagBFS26_08440Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOAE01000039.1Sequence record reported by the local genomic context database.
Genomic interval88 479-88 958 nt480 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span88 479-88 958 ntGCF_001870705::NZ_MOAE01000039.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001870705::NZ_MOAE01000039.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOAE01000039.1All displayed genes belong to this local TCS context.
Neighborhood span88 479-88 958 nt480 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
88 479 nt88 958 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BFS26_RS08435GCF_001870705#BFS26_RS08435
RRCheYCurrent focus
88 479-88 958 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001870705#BFS26_RS08435The current gene is the representative for this cluster.
PFAM architectureNo PFAM architecture availablePFAM architecture is attached when the local PFAM databases provide a match.
PFAM architecture for RROC_2209317
No PFAM cluster architecture is available for the current selection on this server.
Cluster members and taxonomy
Representative gene: GCF_001870705#BFS26_RS08435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 695 · GCF_001870705
AssemblyASM187070v1 · Scaffoldhaploid
Genome composition2 602 875 bp · 60,0% GCBifidobacterium longum subsp. suis
Signal transduction countsGenes 29 · HK 11 · RR 16CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key