1 HisKA_3#1
247-305 aa · 59 aa · 7.4% of protein
Raw token
HisKA_3:247:0.00000000000000996:305:59:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BFS26_RS03245
Histidine kinase, Classic
Bifidobacterium longum subsp. suis · GCF_001870705
ClassHKTypeClassicLength800 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001870705#BFS26_RS03245Stable P2CS identifier used across views.
GenomeGCF_001870705Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length800 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage224 / 800 aa (28.0%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HATPase_c#2
348-441 aa · 94 aa · 11.8% of protein
Raw token
HATPase_c:348:0.000000000000165:441:110:1093 HisKA_3#3
697-767 aa · 71 aa · 8.9% of protein
Raw token
HisKA_3:697:0.0000234:767:71:68- Raw architecture: HisKA_3:247:0.00000000000000996:305:59:68#HATPase_c:348:0.000000000000165:441:110:109#HisKA_3:697:0.0000234:767:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001870705::NZ_MOAE01000021.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span62218-65594Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBFS26_03250RefSeq proteinWP_236736674.1
Context group ID
GCF_001870705::NZ_MOAE01000021.1::G00002Context members
BFS26_RS03245BFS26_RS03250
Partner locus tags
BFS26_RS03245BFS26_RS03250
Partner old locus tags
BFS26_03250BFS26_03255
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236736674.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBFS26_RS03245Primary locus identifier stored in the genes table.
Old locus tagBFS26_03250Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOAE01000021.1Sequence record reported by the local genomic context database.
Genomic interval62 218-64 620 nt2 403 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span62 218-65 594 ntGCF_001870705::NZ_MOAE01000021.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001870705::NZ_MOAE01000021.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOAE01000021.1All displayed genes belong to this local TCS context.
Neighborhood span62 218-65 594 nt3 377 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
62 218 nt65 594 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BFS26_RS03245GCF_001870705#BFS26_RS03245
HKClassicCurrent focus
62 218-64 620 nt · Forward (+)
BFS26_RS03250GCF_001870705#BFS26_RS03250
RRNarL
64 704-65 594 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001870705#BFS26_RS03245The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0556368
Simplified PFAM architecture for HKOC_0556368
PFAM domain coverage: 412 / 800 aa (51.5%)
1 aa800 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[16-141] | HisKA_3[247-308] | HATPase_c[348-440] | DUF7134[488-618]
- Domain count: 4
- Matched identifier: HKOC_0556368
- Positioned domains: DUF7134 16-141 ; HisKA_3 247-308 ; HATPase_c 348-440 ; DUF7134 488-618
Cluster members and taxonomy
Representative gene: GCF_001870705#BFS26_RS03245
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 1 over 1 total members. Page 1 / 1.
GCF_001870705#BFS26_RS03245 (representative) |
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 695 · GCF_001870705
AssemblyASM187070v1 · Scaffoldhaploid
Genome composition2 602 875 bp · 60,0% GCBifidobacterium longum subsp. suis
Signal transduction countsGenes 29 · HK 11 · RR 16CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key