1 HAMP#1
39-109 aa · 71 aa · 20.2% of protein
Raw token
HAMP:39:0.000000000899:109:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BWGOE5_RS04790
Histidine kinase, Classic
Bacillus mycoides · GCF_001855755
ClassHKTypeClassicLength352 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001855755#BWGOE5_RS04790Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length352 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 352 aa (71.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa352 aa
Domain-by-domain annotation3 items
2 HisKA#2
120-187 aa · 68 aa · 19.3% of protein
Raw token
HisKA:120:5.17e-18:187:68:643 HATPase_c#3
238-348 aa · 111 aa · 31.5% of protein
Raw token
HATPase_c:238:7.04e-26:348:111:109- Raw architecture: HAMP:39:0.000000000899:109:71:69#HisKA:120:5.17e-18:187:68:64#HATPase_c:238:7.04e-26:348:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001855755::NZ_LXLQ01000018.1::G00014
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span97288-98346Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBWGOE5_09650RefSeq proteinWP_070128041.1
Context group ID
GCF_001855755::NZ_LXLQ01000018.1::G00014Context members
BWGOE5_RS04790
Partner locus tags
BWGOE5_RS04790
Partner old locus tags
BWGOE5_09650
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_070128041.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBWGOE5_RS04790Primary locus identifier stored in the genes table.
Old locus tagBWGOE5_09650Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LXLQ01000018.1Sequence record reported by the local genomic context database.
Genomic interval97 288-98 346 nt1 059 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span97 288-98 346 ntGCF_001855755::NZ_LXLQ01000018.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001855755::NZ_LXLQ01000018.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LXLQ01000018.1All displayed genes belong to this local TCS context.
Neighborhood span97 288-98 346 nt1 059 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
97 288 nt98 346 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BWGOE5_RS04790GCF_001855755#BWGOE5_RS04790
HKClassicCurrent focus
97 288-98 346 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001757875#BWGOE12_RS04610Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2789250
Simplified PFAM architecture for HKOC_2789250
PFAM domain coverage: 231 / 352 aa (65.6%)
1 aa352 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[57-109] | HisKA[120-186] | HATPase_c[238-348]
- Domain count: 3
- Matched identifier: HKOC_2789250
- Positioned domains: HAMP 57-109 ; HisKA 120-186 ; HATPase_c 238-348
Cluster members and taxonomy
Representative gene: GCF_001757875#BWGOE12_RS04610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001855755
AssemblyASM185575v1 · Contighaploid
Genome composition5 589 181 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 114 · HK 63 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key