1 Response_reg#1
3-113 aa · 111 aa · 48.5% of protein
Raw token
Response_reg:3:4.77e-40:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BWGOE7_RS04580
Response regulator OmpR family
Bacillus mycoides · GCF_001757985
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001757985#BWGOE7_RS04580Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 229 aa (80.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-218 aa · 74 aa · 32.3% of protein
Raw token
Trans_reg_C:145:2.48e-23:218:75:77- Raw architecture: Response_reg:3:4.77e-40:113:111:111#Trans_reg_C:145:2.48e-23:218:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001757985::NZ_LXLS01000014.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2695-4534Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBWGOE7_09240RefSeq proteinWP_070127887.1
Context group ID
GCF_001757985::NZ_LXLS01000014.1::G00013Context members
BWGOE7_RS04575BWGOE7_RS04580
Partner locus tags
BWGOE7_RS04575BWGOE7_RS04580
Partner old locus tags
BWGOE7_09230BWGOE7_09240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_070127887.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBWGOE7_RS04580Primary locus identifier stored in the genes table.
Old locus tagBWGOE7_09240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LXLS01000014.1Sequence record reported by the local genomic context database.
Genomic interval3 845-4 534 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 695-4 534 ntGCF_001757985::NZ_LXLS01000014.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001757985::NZ_LXLS01000014.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LXLS01000014.1All displayed genes belong to this local TCS context.
Neighborhood span2 695-4 534 nt1 840 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 695 nt4 534 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BWGOE7_RS04575GCF_001757985#BWGOE7_RS04575
HKClassic
2 695-3 717 nt · Reverse (-)
BWGOE7_RS04580GCF_001757985#BWGOE7_RS04580
RROmpRCurrent focus
3 845-4 534 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001757875#BWGOE12_RS02580Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1255640
Simplified PFAM architecture for RROC_1255640
PFAM domain coverage: 185 / 229 aa (80.8%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-113] | Trans_reg_C[146-219]
- Domain count: 2
- Matched identifier: RROC_1255640
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Trans_reg_C 146-219 ; Trans_reg_C 146-219
Cluster members and taxonomy
Representative gene: GCF_001757875#BWGOE12_RS02580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001757985
AssemblyASM175798v1 · Contighaploid
Genome composition5 675 247 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 118 · HK 65 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key