1 Response_reg#1
5-115 aa · 111 aa · 46.4% of protein
Raw token
Response_reg:5:1.56e-37:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BWGOE6_RS22655
Response regulator OmpR family
Bacillus mycoides · GCF_001757965
ClassRRTypeOmpRLength239 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001757965#BWGOE6_RS22655Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 239 aa (78.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-232 aa · 77 aa · 32.2% of protein
Raw token
Trans_reg_C:156:4.51e-38:232:77:77- Raw architecture: Response_reg:5:1.56e-37:115:111:111#Trans_reg_C:156:4.51e-38:232:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001757965::NZ_LXLR01000051.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span768249-770724Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBWGOE6_46000RefSeq proteinWP_002112195.1
Context group ID
GCF_001757965::NZ_LXLR01000051.1::G00049Context members
BWGOE6_RS22650BWGOE6_RS22655
Partner locus tags
BWGOE6_RS22650BWGOE6_RS22655
Partner old locus tags
BWGOE6_45990BWGOE6_46000
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002112195.1Primary protein accession used for annex mappings.
UniProt accessionJ8FE99Primary UniProt accession resolved in the annex database.
UniProt IDJ8FE99_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBWGOE6_RS22655Primary locus identifier stored in the genes table.
Old locus tagBWGOE6_46000Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LXLR01000051.1Sequence record reported by the local genomic context database.
Genomic interval770 005-770 724 nt720 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span768 249-770 724 ntGCF_001757965::NZ_LXLR01000051.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001757965::NZ_LXLR01000051.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LXLR01000051.1All displayed genes belong to this local TCS context.
Neighborhood span768 249-770 724 nt2 476 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
768 249 nt770 724 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BWGOE6_RS22650GCF_001757965#BWGOE6_RS22650
HKClassic
768 249-770 012 nt · Reverse (-)
BWGOE6_RS22655GCF_001757965#BWGOE6_RS22655
RROmpRCurrent focus
770 005-770 724 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291075#IGC_RS04695Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0906330
Simplified PFAM architecture for RROC_0906330
PFAM domain coverage: 188 / 239 aa (78.7%)
1 aa239 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-115] | Trans_reg_C[156-232]
- Domain count: 2
- Matched identifier: RROC_0906330
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; Trans_reg_C 156-232 ; Trans_reg_C 156-232
Cluster members and taxonomy
Representative gene: GCF_000291075#IGC_RS04695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001757965
AssemblyASM175796v1 · Contighaploid
Genome composition5 631 989 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 115 · HK 64 · RR 51CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key