1 HAMP#1
39-109 aa · 71 aa · 19.8% of protein
Raw token
HAMP:39:0.000000000583:109:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BWGOE11_RS17525
Histidine kinase, Classic
Bacillus mycoides · GCF_001757905
ClassHKTypeClassicLength359 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_001757905#BWGOE11_RS17525Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length359 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 359 aa (69.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa359 aa
Domain-by-domain annotation3 items
2 HisKA#2
120-187 aa · 68 aa · 18.9% of protein
Raw token
HisKA:120:6.55e-19:187:68:643 HATPase_c#3
238-348 aa · 111 aa · 30.9% of protein
Raw token
HATPase_c:238:1.09e-26:348:111:109- Raw architecture: HAMP:39:0.000000000583:109:71:69#HisKA:120:6.55e-19:187:68:64#HATPase_c:238:1.09e-26:348:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_001757905::NZ_LXLX01000045.1::G00043
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span43951-48026Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBWGOE11_35560RefSeq proteinWP_002110999.1
Context group ID
GCF_001757905::NZ_LXLX01000045.1::G00043Context members
BWGOE11_RS17525BWGOE11_RS17530BWGOE11_RS17535
Partner locus tags
BWGOE11_RS17525BWGOE11_RS17530BWGOE11_RS17535
Partner old locus tags
BWGOE11_35560BWGOE11_35570BWGOE11_35580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002110999.1Primary protein accession used for annex mappings.
UniProt accessionA0A1D3MQ20Primary UniProt accession resolved in the annex database.
UniProt IDA0A1D3MQ20_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBWGOE11_RS17525Primary locus identifier stored in the genes table.
Old locus tagBWGOE11_35560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LXLX01000045.1Sequence record reported by the local genomic context database.
Genomic interval43 951-45 030 nt1 080 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span43 951-48 026 ntGCF_001757905::NZ_LXLX01000045.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001757905::NZ_LXLX01000045.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LXLX01000045.1All displayed genes belong to this local TCS context.
Neighborhood span43 951-48 026 nt4 076 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 951 nt48 026 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
BWGOE11_RS17525GCF_001757905#BWGOE11_RS17525
HKClassicCurrent focus
43 951-45 030 nt · Reverse (-)
BWGOE11_RS17530GCF_001757905#BWGOE11_RS17530
RROmpR
45 027-45 740 nt · Reverse (-)
BWGOE11_RS17535GCF_001757905#BWGOE11_RS17535
HKClassic
46 236-48 026 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000293545#IEM_RS04830Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2753126
Simplified PFAM architecture for HKOC_2753126
PFAM domain coverage: 178 / 359 aa (49.6%)
1 aa359 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[120-186] | HATPase_c[238-348]
- Domain count: 2
- Matched identifier: HKOC_2753126
- Positioned domains: HisKA 120-186 ; HATPase_c 238-348
Cluster members and taxonomy
Representative gene: GCF_000293545#IEM_RS04830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001757905
AssemblyASM175790v1 · Contighaploid
Genome composition5 625 374 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 113 · HK 62 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key