1 HAMP#1
162-229 aa · 68 aa · 14.7% of protein
Raw token
HAMP:162:0.000000121:229:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BWGOE8_RS28890
Histidine kinase, Classic
Bacillus mycoides · GCF_001757835
ClassHKTypeClassicLength464 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001757835#BWGOE8_RS28890Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length464 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 464 aa (51.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa464 aa
Domain-by-domain annotation3 items
2 HisKA#2
240-299 aa · 60 aa · 12.9% of protein
Raw token
HisKA:240:0.000000000038:299:60:643 HATPase_c#3
354-464 aa · 111 aa · 23.9% of protein
Raw token
HATPase_c:354:2.06e-30:464:111:109- Raw architecture: HAMP:162:0.000000121:229:69:69#HisKA:240:0.000000000038:299:60:64#HATPase_c:354:2.06e-30:464:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001757835::NZ_LXLT01000118.1::G00071
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span570-2683Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBWGOE8_58780RefSeq proteinWP_070146050.1
Context group ID
GCF_001757835::NZ_LXLT01000118.1::G00071Context members
BWGOE8_RS28885BWGOE8_RS28890
Partner locus tags
BWGOE8_RS28885BWGOE8_RS28890
Partner old locus tags
BWGOE8_58770BWGOE8_58780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_070146050.1Primary protein accession used for annex mappings.
UniProt accessionA0A1E8AY27Primary UniProt accession resolved in the annex database.
UniProt IDA0A1E8AY27_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBWGOE8_RS28890Primary locus identifier stored in the genes table.
Old locus tagBWGOE8_58780Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LXLT01000118.1Sequence record reported by the local genomic context database.
Genomic interval1 289-2 683 nt1 395 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span570-2 683 ntGCF_001757835::NZ_LXLT01000118.1::G00071
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001757835::NZ_LXLT01000118.1::G00071Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LXLT01000118.1All displayed genes belong to this local TCS context.
Neighborhood span570-2 683 nt2 114 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
570 nt2 683 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BWGOE8_RS28885GCF_001757835#BWGOE8_RS28885
RROmpR
570-1 292 nt · Forward (+)
BWGOE8_RS28890GCF_001757835#BWGOE8_RS28890
HKClassicCurrent focus
1 289-2 683 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001757835#BWGOE8_RS28890The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1785410
Simplified PFAM architecture for HKOC_1785410
PFAM domain coverage: 169 / 464 aa (36.4%)
1 aa464 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[241-300] | HATPase_c[355-463]
- Domain count: 2
- Matched identifier: HKOC_1785410
- Positioned domains: HisKA 241-300 ; HATPase_c 355-463
Cluster members and taxonomy
Representative gene: GCF_001757835#BWGOE8_RS28890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001757835
AssemblyASM175783v1 · Contighaploid
Genome composition5 851 729 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 119 · HK 66 · RR 53CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key