1 Response_reg#1
13-117 aa · 105 aa · 43.8% of protein
Raw token
Response_reg:13:1.79e-29:117:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BWGOE8_RS28885
Response regulator OmpR family
Bacillus mycoides · GCF_001757835
ClassRRTypeOmpRLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001757835#BWGOE8_RS28885Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 240 aa (75.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-233 aa · 77 aa · 32.1% of protein
Raw token
Trans_reg_C:157:3.02e-33:233:77:77- Raw architecture: Response_reg:13:1.79e-29:117:106:111#Trans_reg_C:157:3.02e-33:233:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001757835::NZ_LXLT01000118.1::G00071
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span570-2683Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBWGOE8_58770RefSeq proteinWP_070146049.1
Context group ID
GCF_001757835::NZ_LXLT01000118.1::G00071Context members
BWGOE8_RS28885BWGOE8_RS28890
Partner locus tags
BWGOE8_RS28885BWGOE8_RS28890
Partner old locus tags
BWGOE8_58770BWGOE8_58780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_070146049.1Primary protein accession used for annex mappings.
UniProt accessionA0A1E8AY45Primary UniProt accession resolved in the annex database.
UniProt IDA0A1E8AY45_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBWGOE8_RS28885Primary locus identifier stored in the genes table.
Old locus tagBWGOE8_58770Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LXLT01000118.1Sequence record reported by the local genomic context database.
Genomic interval570-1 292 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span570-2 683 ntGCF_001757835::NZ_LXLT01000118.1::G00071
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001757835::NZ_LXLT01000118.1::G00071Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LXLT01000118.1All displayed genes belong to this local TCS context.
Neighborhood span570-2 683 nt2 114 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
570 nt2 683 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BWGOE8_RS28885GCF_001757835#BWGOE8_RS28885
RROmpRCurrent focus
570-1 292 nt · Forward (+)
BWGOE8_RS28890GCF_001757835#BWGOE8_RS28890
HKClassic
1 289-2 683 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001757835#BWGOE8_RS28885The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0885923
Simplified PFAM architecture for RROC_0885923
PFAM domain coverage: 181 / 240 aa (75.4%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[13-119] | Trans_reg_C[160-233]
- Domain count: 2
- Matched identifier: RROC_0885923
- Positioned domains: Response_reg 13-119 ; Response_reg 13-119 ; Trans_reg_C 160-233 ; Trans_reg_C 160-233
Cluster members and taxonomy
Representative gene: GCF_001757835#BWGOE8_RS28885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001757835
AssemblyASM175783v1 · Contighaploid
Genome composition5 851 729 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 119 · HK 66 · RR 53CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key