1 PocR#1
7-75 aa · 69 aa · 11.5% of protein
Raw token
PocR:7:0.00000121:75:104:162P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BWGOE8_RS17030
Histidine kinase, Classic
Bacillus mycoides · GCF_001757835
ClassHKTypeClassicLength600 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001757835#BWGOE8_RS17030Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PocRPASPAS_4HisKAHATPase_c
Protein length600 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage448 / 600 aa (74.7%)Merged over positioned domains only.
Domain description1 PocR,1 PAS,1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa600 aa
Domain-by-domain annotation5 items
2 PAS#2
129-238 aa · 110 aa · 18.3% of protein
Raw token
PAS:129:0.0000000000124:238:111:1133 PAS_4#3
259-361 aa · 103 aa · 17.2% of protein
Raw token
PAS_4:259:0.000000000000447:361:108:1104 HisKA#4
376-438 aa · 63 aa · 10.5% of protein
Raw token
HisKA:376:0.000000000000506:438:63:645 HATPase_c#5
483-585 aa · 103 aa · 17.2% of protein
Raw token
HATPase_c:483:4.31e-25:585:106:109- Raw architecture: PocR:7:0.00000121:75:104:162#PAS:129:0.0000000000124:238:111:113#PAS_4:259:0.000000000000447:361:108:110#HisKA:376:0.000000000000506:438:63:64#HATPase_c:483:4.31e-25:585:106:109
- Domain description: 1 PocR,1 PAS,1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001757835::NZ_LXLT01000054.1::G00047
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span5992-7794Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBWGOE8_34980RefSeq proteinWP_070144264.1
Context group ID
GCF_001757835::NZ_LXLT01000054.1::G00047Context members
BWGOE8_RS17030
Partner locus tags
BWGOE8_RS17030
Partner old locus tags
BWGOE8_34980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_070144264.1Primary protein accession used for annex mappings.
UniProt accessionA0A1E8B4I1Primary UniProt accession resolved in the annex database.
UniProt IDA0A1E8B4I1_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBWGOE8_RS17030Primary locus identifier stored in the genes table.
Old locus tagBWGOE8_34980Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LXLT01000054.1Sequence record reported by the local genomic context database.
Genomic interval5 992-7 794 nt1 803 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 992-7 794 ntGCF_001757835::NZ_LXLT01000054.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001757835::NZ_LXLT01000054.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LXLT01000054.1All displayed genes belong to this local TCS context.
Neighborhood span5 992-7 794 nt1 803 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 992 nt7 794 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BWGOE8_RS17030GCF_001757835#BWGOE8_RS17030
HKClassicCurrent focus
5 992-7 794 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001757835#BWGOE8_RS17030The current gene is the representative for this cluster.
PFAM architecturePAS + PAS_4 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1053165
Simplified PFAM architecture for HKOC_1053165
PFAM domain coverage: 352 / 600 aa (58.7%)
1 aa600 aa
PASPAS_4HisKAHATPase_c
- Simplified architecture: PAS + PAS_4 + HisKA + HATPase_c
- Raw architecture: PAS[130-213] | PAS_4[259-361] | HisKA[377-437] | HATPase_c[483-586]
- Domain count: 4
- Matched identifier: HKOC_1053165
- Positioned domains: PAS 130-213 ; PAS_4 259-361 ; HisKA 377-437 ; HATPase_c 483-586
Cluster members and taxonomy
Representative gene: GCF_001757835#BWGOE8_RS17030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001757835
AssemblyASM175783v1 · Contighaploid
Genome composition5 851 729 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 119 · HK 66 · RR 53CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key