1 HAMP#1
309-376 aa · 68 aa · 11.1% of protein
Raw token
HAMP:309:0.0000000000000637:376:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BWGOE8_RS15005
Histidine kinase, Classic
Bacillus mycoides · GCF_001757835
ClassHKTypeClassicLength615 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001757835#BWGOE8_RS15005Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length615 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage237 / 615 aa (38.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa615 aa
Domain-by-domain annotation3 items
2 HisKA#2
396-460 aa · 65 aa · 10.6% of protein
Raw token
HisKA:396:0.000000000000262:460:65:643 HATPase_c#3
508-611 aa · 104 aa · 16.9% of protein
Raw token
HATPase_c:508:2.77e-21:611:105:109- Raw architecture: HAMP:309:0.0000000000000637:376:68:69#HisKA:396:0.000000000000262:460:65:64#HATPase_c:508:2.77e-21:611:105:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001757835::NZ_LXLT01000039.1::G00044
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span22895-24742Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBWGOE8_30750RefSeq proteinWP_070144211.1
Context group ID
GCF_001757835::NZ_LXLT01000039.1::G00044Context members
BWGOE8_RS15005
Partner locus tags
BWGOE8_RS15005
Partner old locus tags
BWGOE8_30750
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_070144211.1Primary protein accession used for annex mappings.
UniProt accessionA0A1E8B653Primary UniProt accession resolved in the annex database.
UniProt IDA0A1E8B653_BACMYDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBWGOE8_RS15005Primary locus identifier stored in the genes table.
Old locus tagBWGOE8_30750Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LXLT01000039.1Sequence record reported by the local genomic context database.
Genomic interval22 895-24 742 nt1 848 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span22 895-24 742 ntGCF_001757835::NZ_LXLT01000039.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001757835::NZ_LXLT01000039.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LXLT01000039.1All displayed genes belong to this local TCS context.
Neighborhood span22 895-24 742 nt1 848 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 895 nt24 742 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BWGOE8_RS15005GCF_001757835#BWGOE8_RS15005
HKClassicCurrent focus
22 895-24 742 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001757835#BWGOE8_RS15005The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0989083
Simplified PFAM architecture for HKOC_0989083
PFAM domain coverage: 221 / 615 aa (35.9%)
1 aa615 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[327-376] | HisKA[396-460] | HATPase_c[507-612]
- Domain count: 3
- Matched identifier: HKOC_0989083
- Positioned domains: HAMP 327-376 ; HisKA 396-460 ; HATPase_c 507-612
Cluster members and taxonomy
Representative gene: GCF_001757835#BWGOE8_RS15005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001757835
AssemblyASM175783v1 · Contighaploid
Genome composition5 851 729 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 119 · HK 66 · RR 53CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key