1 PAS_4#1
222-310 aa · 89 aa · 11.1% of protein
Raw token
PAS_4:222:0.00000498:310:100:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BWGOE8_RS12160
Histidine kinase, Classic
Bacillus mycoides · GCF_001757835
ClassHKTypeClassicLength801 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001757835#BWGOE8_RS12160Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PAS_4HisKAHATPase_c
Protein length801 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage467 / 801 aa (58.3%)Merged over positioned domains only.
Domain description3 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa801 aa
Domain-by-domain annotation5 items
2 PAS_4#2
332-437 aa · 106 aa · 13.2% of protein
Raw token
PAS_4:332:8.36e-17:437:108:1103 PAS_4#3
461-570 aa · 110 aa · 13.7% of protein
Raw token
PAS_4:461:0.000000000127:570:113:1104 HisKA#4
587-647 aa · 61 aa · 7.6% of protein
Raw token
HisKA:587:0.000000000000374:647:61:645 HATPase_c#5
695-795 aa · 101 aa · 12.6% of protein
Raw token
HATPase_c:695:1.13e-27:795:104:109- Raw architecture: PAS_4:222:0.00000498:310:100:110#PAS_4:332:8.36e-17:437:108:110#PAS_4:461:0.000000000127:570:113:110#HisKA:587:0.000000000000374:647:61:64#HATPase_c:695:1.13e-27:795:104:109
- Domain description: 3 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001757835::NZ_LXLT01000027.1::G00035
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span31443-33848Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBWGOE8_24910RefSeq proteinWP_070142959.1
Context group ID
GCF_001757835::NZ_LXLT01000027.1::G00035Context members
BWGOE8_RS12160
Partner locus tags
BWGOE8_RS12160
Partner old locus tags
BWGOE8_24910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_070142959.1Primary protein accession used for annex mappings.
UniProt accessionA0A1E8B7N3Primary UniProt accession resolved in the annex database.
UniProt IDA0A1E8B7N3_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBWGOE8_RS12160Primary locus identifier stored in the genes table.
Old locus tagBWGOE8_24910Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LXLT01000027.1Sequence record reported by the local genomic context database.
Genomic interval31 443-33 848 nt2 406 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span31 443-33 848 ntGCF_001757835::NZ_LXLT01000027.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001757835::NZ_LXLT01000027.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LXLT01000027.1All displayed genes belong to this local TCS context.
Neighborhood span31 443-33 848 nt2 406 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 443 nt33 848 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BWGOE8_RS12160GCF_001757835#BWGOE8_RS12160
HKClassicCurrent focus
31 443-33 848 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001757835#BWGOE8_RS12160The current gene is the representative for this cluster.
PFAM architecturePAS_4 + PAS_9 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0554490
Simplified PFAM architecture for HKOC_0554490
PFAM domain coverage: 364 / 801 aa (45.4%)
1 aa801 aa
PAS_4PAS_9HisKAHATPase_c
- Simplified architecture: PAS_4 + PAS_9 + HisKA + HATPase_c
- Raw architecture: PAS_4[331-437] | PAS_9[476-569] | HisKA[587-646] | HATPase_c[694-796]
- Domain count: 4
- Matched identifier: HKOC_0554490
- Positioned domains: PAS_4 331-437 ; PAS_9 476-569 ; HisKA 587-646 ; HATPase_c 694-796
Cluster members and taxonomy
Representative gene: GCF_001757835#BWGOE8_RS12160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001757835
AssemblyASM175783v1 · Contighaploid
Genome composition5 851 729 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 119 · HK 66 · RR 53CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key