1 Response_reg#1
6-116 aa · 111 aa · 52.6% of protein
Raw token
Response_reg:6:4.41e-36:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BWGOE8_RS10730
Response regulator NarL family
Bacillus mycoides · GCF_001757835
ClassRRTypeNarLLength211 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001757835#BWGOE8_RS10730Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length211 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 211 aa (78.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa211 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
151-205 aa · 55 aa · 26.1% of protein
Raw token
HTH_LUXR:151:2.02e-24:205:55:58- Raw architecture: Response_reg:6:4.41e-36:116:111:111#HTH_LUXR:151:2.02e-24:205:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001757835::NZ_LXLT01000024.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span178231-179978Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBWGOE8_21890RefSeq proteinWP_070142420.1
Context group ID
GCF_001757835::NZ_LXLT01000024.1::G00031Context members
BWGOE8_RS10725BWGOE8_RS10730
Partner locus tags
BWGOE8_RS10725BWGOE8_RS10730
Partner old locus tags
BWGOE8_21880BWGOE8_21890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_070142420.1Primary protein accession used for annex mappings.
UniProt accessionA0A1E8B8Z6Primary UniProt accession resolved in the annex database.
UniProt IDA0A1E8B8Z6_BACMYDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBWGOE8_RS10730Primary locus identifier stored in the genes table.
Old locus tagBWGOE8_21890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LXLT01000024.1Sequence record reported by the local genomic context database.
Genomic interval179 343-179 978 nt636 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span178 231-179 978 ntGCF_001757835::NZ_LXLT01000024.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001757835::NZ_LXLT01000024.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LXLT01000024.1All displayed genes belong to this local TCS context.
Neighborhood span178 231-179 978 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
178 231 nt179 978 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BWGOE8_RS10725GCF_001757835#BWGOE8_RS10725
HKClassic
178 231-179 328 nt · Forward (+)
BWGOE8_RS10730GCF_001757835#BWGOE8_RS10730
RRNarLCurrent focus
179 343-179 978 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001757835#BWGOE8_RS10730The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2005813
Simplified PFAM architecture for RROC_2005813
PFAM domain coverage: 167 / 211 aa (79.1%)
1 aa211 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-116] | GerE[150-205]
- Domain count: 2
- Matched identifier: RROC_2005813
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; GerE 150-205 ; GerE 150-205
Cluster members and taxonomy
Representative gene: GCF_001757835#BWGOE8_RS10730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001757835
AssemblyASM175783v1 · Contighaploid
Genome composition5 851 729 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 119 · HK 66 · RR 53CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key