1 HisKA#1
234-294 aa · 61 aa · 13.5% of protein
Raw token
HisKA:234:0.00000000522:294:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BWGOE8_RS04825
Histidine kinase, Classic
Bacillus mycoides · GCF_001757835
ClassHKTypeClassicLength453 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001757835#BWGOE8_RS04825Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length453 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 453 aa (37.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa453 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
343-451 aa · 109 aa · 24.1% of protein
Raw token
HATPase_c:343:1.99e-18:451:109:109- Raw architecture: HisKA:234:0.00000000522:294:61:64#HATPase_c:343:1.99e-18:451:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001757835::NZ_LXLT01000015.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12147-14158Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBWGOE8_09800RefSeq proteinWP_070144485.1
Context group ID
GCF_001757835::NZ_LXLT01000015.1::G00013Context members
BWGOE8_RS04820BWGOE8_RS04825
Partner locus tags
BWGOE8_RS04820BWGOE8_RS04825
Partner old locus tags
BWGOE8_09790BWGOE8_09800
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_070144485.1Primary protein accession used for annex mappings.
UniProt accessionA0A1E8BC65Primary UniProt accession resolved in the annex database.
UniProt IDA0A1E8BC65_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBWGOE8_RS04825Primary locus identifier stored in the genes table.
Old locus tagBWGOE8_09800Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LXLT01000015.1Sequence record reported by the local genomic context database.
Genomic interval12 797-14 158 nt1 362 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 147-14 158 ntGCF_001757835::NZ_LXLT01000015.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001757835::NZ_LXLT01000015.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LXLT01000015.1All displayed genes belong to this local TCS context.
Neighborhood span12 147-14 158 nt2 012 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 147 nt14 158 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BWGOE8_RS04820GCF_001757835#BWGOE8_RS04820
RROmpR
12 147-12 809 nt · Forward (+)
BWGOE8_RS04825GCF_001757835#BWGOE8_RS04825
HKClassicCurrent focus
12 797-14 158 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001757835#BWGOE8_RS04825The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1926739
Simplified PFAM architecture for HKOC_1926739
PFAM domain coverage: 169 / 453 aa (37.3%)
1 aa453 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[234-294] | HATPase_c[344-451]
- Domain count: 2
- Matched identifier: HKOC_1926739
- Positioned domains: HisKA 234-294 ; HATPase_c 344-451
Cluster members and taxonomy
Representative gene: GCF_001757835#BWGOE8_RS04825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001757835
AssemblyASM175783v1 · Contighaploid
Genome composition5 851 729 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 119 · HK 66 · RR 53CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key