1 HAMP#1
174-242 aa · 69 aa · 14.2% of protein
Raw token
HAMP:174:5.77e-17:242:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BWGOE1_RS22975
Histidine kinase, Classic
Bacillus mycoides · GCF_001757785
ClassHKTypeClassicLength485 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001757785#BWGOE1_RS22975Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length485 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 485 aa (50.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa485 aa
Domain-by-domain annotation3 items
2 HisKA#2
255-319 aa · 65 aa · 13.4% of protein
Raw token
HisKA:255:7.14e-16:319:65:643 HATPase_c#3
368-477 aa · 110 aa · 22.7% of protein
Raw token
HATPase_c:368:4.89e-30:477:110:109- Raw architecture: HAMP:174:5.77e-17:242:69:69#HisKA:255:7.14e-16:319:65:64#HATPase_c:368:4.89e-30:477:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001757785::NZ_LXLM01000044.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span227738-229886Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBWGOE1_46670RefSeq proteinWP_002112299.1
Context group ID
GCF_001757785::NZ_LXLM01000044.1::G00051Context members
BWGOE1_RS22970BWGOE1_RS22975
Partner locus tags
BWGOE1_RS22970BWGOE1_RS22975
Partner old locus tags
BWGOE1_46660BWGOE1_46670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002112299.1Primary protein accession used for annex mappings.
UniProt accessionA0A1C4FUB9Primary UniProt accession resolved in the annex database.
UniProt IDA0A1C4FUB9_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBWGOE1_RS22975Primary locus identifier stored in the genes table.
Old locus tagBWGOE1_46670Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LXLM01000044.1Sequence record reported by the local genomic context database.
Genomic interval228 429-229 886 nt1 458 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span227 738-229 886 ntGCF_001757785::NZ_LXLM01000044.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001757785::NZ_LXLM01000044.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LXLM01000044.1All displayed genes belong to this local TCS context.
Neighborhood span227 738-229 886 nt2 149 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
227 738 nt229 886 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BWGOE1_RS22970GCF_001757785#BWGOE1_RS22970
RROmpR
227 738-228 427 nt · Reverse (-)
BWGOE1_RS22975GCF_001757785#BWGOE1_RS22975
HKClassicCurrent focus
228 429-229 886 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000293545#IEM_RS10730Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1576042
Simplified PFAM architecture for HKOC_1576042
PFAM domain coverage: 228 / 485 aa (47.0%)
1 aa485 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[191-242] | HisKA[255-319] | HATPase_c[369-479]
- Domain count: 3
- Matched identifier: HKOC_1576042
- Positioned domains: HAMP 191-242 ; HisKA 255-319 ; HATPase_c 369-479
Cluster members and taxonomy
Representative gene: GCF_000293545#IEM_RS10730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001757785
AssemblyASM175778v1 · Contighaploid
Genome composition5 613 531 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 116 · HK 64 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key