1 PocR#1
7-75 aa · 69 aa · 11.6% of protein
Raw token
PocR:7:0.000000945:75:104:162P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BWGOE1_RS16905
Histidine kinase, Classic
Bacillus mycoides · GCF_001757785
ClassHKTypeClassicLength596 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_001757785#BWGOE1_RS16905Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PocRPASPAS_4HisKAHATPase_c
Protein length596 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage442 / 596 aa (74.2%)Merged over positioned domains only.
Domain description1 PocR,1 PAS,1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa596 aa
Domain-by-domain annotation5 items
2 PAS#2
131-234 aa · 104 aa · 17.4% of protein
Raw token
PAS:131:0.000000000501:234:109:1133 PAS_4#3
255-357 aa · 103 aa · 17.3% of protein
Raw token
PAS_4:255:0.000000000000194:357:108:1104 HisKA#4
372-434 aa · 63 aa · 10.6% of protein
Raw token
HisKA:372:0.000000000000287:434:63:645 HATPase_c#5
479-581 aa · 103 aa · 17.3% of protein
Raw token
HATPase_c:479:4.14e-24:581:107:109- Raw architecture: PocR:7:0.000000945:75:104:162#PAS:131:0.000000000501:234:109:113#PAS_4:255:0.000000000000194:357:108:110#HisKA:372:0.000000000000287:434:63:64#HATPase_c:479:4.14e-24:581:107:109
- Domain description: 1 PocR,1 PAS,1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_001757785::NZ_LXLM01000041.1::G00043
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span227497-231572Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBWGOE1_34320RefSeq proteinWP_002111002.1
Context group ID
GCF_001757785::NZ_LXLM01000041.1::G00043Context members
BWGOE1_RS16895BWGOE1_RS16900BWGOE1_RS16905
Partner locus tags
BWGOE1_RS16895BWGOE1_RS16900BWGOE1_RS16905
Partner old locus tags
BWGOE1_34300BWGOE1_34310BWGOE1_34320
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002111002.1Primary protein accession used for annex mappings.
UniProt accessionA0A1D3MQ33Primary UniProt accession resolved in the annex database.
UniProt IDA0A1D3MQ33_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBWGOE1_RS16905Primary locus identifier stored in the genes table.
Old locus tagBWGOE1_34320Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LXLM01000041.1Sequence record reported by the local genomic context database.
Genomic interval229 782-231 572 nt1 791 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span227 497-231 572 ntGCF_001757785::NZ_LXLM01000041.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001757785::NZ_LXLM01000041.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LXLM01000041.1All displayed genes belong to this local TCS context.
Neighborhood span227 497-231 572 nt4 076 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
227 497 nt231 572 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
BWGOE1_RS16895GCF_001757785#BWGOE1_RS16895
HKClassic
227 497-228 576 nt · Reverse (-)
BWGOE1_RS16900GCF_001757785#BWGOE1_RS16900
RROmpR
228 573-229 286 nt · Reverse (-)
BWGOE1_RS16905GCF_001757785#BWGOE1_RS16905
HKClassicCurrent focus
229 782-231 572 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000293545#IEM_RS04840Use this link to inspect the representative gene detail.
PFAM architecturePAS + PAS_4 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1073663
Simplified PFAM architecture for HKOC_1073663
PFAM domain coverage: 347 / 596 aa (58.2%)
1 aa596 aa
PASPAS_4HisKAHATPase_c
- Simplified architecture: PAS + PAS_4 + HisKA + HATPase_c
- Raw architecture: PAS[131-209] | PAS_4[255-357] | HisKA[373-433] | HATPase_c[479-582]
- Domain count: 4
- Matched identifier: HKOC_1073663
- Positioned domains: PAS 131-209 ; PAS_4 255-357 ; HisKA 373-433 ; HATPase_c 479-582
Cluster members and taxonomy
Representative gene: GCF_000293545#IEM_RS04840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001757785
AssemblyASM175778v1 · Contighaploid
Genome composition5 613 531 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 116 · HK 64 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key