1 HAMP#1
50-119 aa · 70 aa · 19.9% of protein
Raw token
HAMP:50:0.000000000000473:119:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BWGOE1_RS09165
Histidine kinase, Classic
Bacillus mycoides · GCF_001757785
ClassHKTypeClassicLength352 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001757785#BWGOE1_RS09165Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length352 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 352 aa (68.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa352 aa
Domain-by-domain annotation3 items
2 HisKA#2
130-191 aa · 62 aa · 17.6% of protein
Raw token
HisKA:130:0.00000000000035:191:62:643 HATPase_c#3
243-350 aa · 108 aa · 30.7% of protein
Raw token
HATPase_c:243:2.64e-25:350:109:109- Raw architecture: HAMP:50:0.000000000000473:119:70:69#HisKA:130:0.00000000000035:191:62:64#HATPase_c:243:2.64e-25:350:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001757785::NZ_LXLM01000027.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span272515-274261Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBWGOE1_18600RefSeq proteinWP_002202420.1
Context group ID
GCF_001757785::NZ_LXLM01000027.1::G00028Context members
BWGOE1_RS09160BWGOE1_RS09165
Partner locus tags
BWGOE1_RS09160BWGOE1_RS09165
Partner old locus tags
BWGOE1_18590BWGOE1_18600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002202420.1Primary protein accession used for annex mappings.
UniProt accessionA0A1C4CCG2Primary UniProt accession resolved in the annex database.
UniProt IDA0A1C4CCG2_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBWGOE1_RS09165Primary locus identifier stored in the genes table.
Old locus tagBWGOE1_18600Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LXLM01000027.1Sequence record reported by the local genomic context database.
Genomic interval273 203-274 261 nt1 059 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span272 515-274 261 ntGCF_001757785::NZ_LXLM01000027.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001757785::NZ_LXLM01000027.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LXLM01000027.1All displayed genes belong to this local TCS context.
Neighborhood span272 515-274 261 nt1 747 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
272 515 nt274 261 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BWGOE1_RS09160GCF_001757785#BWGOE1_RS09160
RROmpR
272 515-273 213 nt · Forward (+)
BWGOE1_RS09165GCF_001757785#BWGOE1_RS09165
HKClassicCurrent focus
273 203-274 261 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000293545#IEM_RS17405Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2788811
Simplified PFAM architecture for HKOC_2788811
PFAM domain coverage: 224 / 352 aa (63.6%)
1 aa352 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[67-119] | HisKA[130-191] | HATPase_c[243-351]
- Domain count: 3
- Matched identifier: HKOC_2788811
- Positioned domains: HAMP 67-119 ; HisKA 130-191 ; HATPase_c 243-351
Cluster members and taxonomy
Representative gene: GCF_000293545#IEM_RS17405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001757785
AssemblyASM175778v1 · Contighaploid
Genome composition5 613 531 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 116 · HK 64 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key