1 HAMP#1
166-234 aa · 69 aa · 14.8% of protein
Raw token
HAMP:166:4.71e-16:234:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BWGOE1_RS04825
Histidine kinase, Classic
Bacillus mycoides · GCF_001757785
ClassHKTypeClassicLength467 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001757785#BWGOE1_RS04825Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length467 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 467 aa (53.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa467 aa
Domain-by-domain annotation3 items
2 HisKA#2
239-304 aa · 66 aa · 14.1% of protein
Raw token
HisKA:239:0.0000000000000743:304:66:643 HATPase_c#3
348-460 aa · 113 aa · 24.2% of protein
Raw token
HATPase_c:348:6.98e-32:460:113:109- Raw architecture: HAMP:166:4.71e-16:234:69:69#HisKA:239:0.0000000000000743:304:66:64#HATPase_c:348:6.98e-32:460:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001757785::NZ_LXLM01000018.1::G00014
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span9717-11120Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBWGOE1_09790RefSeq proteinWP_070138842.1
Context group ID
GCF_001757785::NZ_LXLM01000018.1::G00014Context members
BWGOE1_RS04825
Partner locus tags
BWGOE1_RS04825
Partner old locus tags
BWGOE1_09790
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_070138842.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBWGOE1_RS04825Primary locus identifier stored in the genes table.
Old locus tagBWGOE1_09790Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LXLM01000018.1Sequence record reported by the local genomic context database.
Genomic interval9 717-11 120 nt1 404 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 717-11 120 ntGCF_001757785::NZ_LXLM01000018.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001757785::NZ_LXLM01000018.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LXLM01000018.1All displayed genes belong to this local TCS context.
Neighborhood span9 717-11 120 nt1 404 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 717 nt11 120 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BWGOE1_RS04825GCF_001757785#BWGOE1_RS04825
HKClassicCurrent focus
9 717-11 120 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001757785#BWGOE1_RS04825The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1749878
Simplified PFAM architecture for HKOC_1749878
PFAM domain coverage: 228 / 467 aa (48.8%)
1 aa467 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[184-233] | HisKA[239-304] | HATPase_c[348-459]
- Domain count: 3
- Matched identifier: HKOC_1749878
- Positioned domains: HAMP 184-233 ; HisKA 239-304 ; HATPase_c 348-459
Cluster members and taxonomy
Representative gene: GCF_001757785#BWGOE1_RS04825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001757785
AssemblyASM175778v1 · Contighaploid
Genome composition5 613 531 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 116 · HK 64 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key