1 HAMP#1
39-109 aa · 71 aa · 20.2% of protein
Raw token
HAMP:39:0.000000000975:109:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BWGOE1_RS04760
Histidine kinase, Classic
Bacillus mycoides · GCF_001757785
ClassHKTypeClassicLength352 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001757785#BWGOE1_RS04760Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length352 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 352 aa (71.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa352 aa
Domain-by-domain annotation3 items
2 HisKA#2
120-187 aa · 68 aa · 19.3% of protein
Raw token
HisKA:120:5.23e-18:187:68:643 HATPase_c#3
238-348 aa · 111 aa · 31.5% of protein
Raw token
HATPase_c:238:6.35e-26:348:111:109- Raw architecture: HAMP:39:0.000000000975:109:71:69#HisKA:120:5.23e-18:187:68:64#HATPase_c:238:6.35e-26:348:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001757785::NZ_LXLM01000017.1::G00013
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span9858-10916Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBWGOE1_09660RefSeq proteinWP_070138835.1
Context group ID
GCF_001757785::NZ_LXLM01000017.1::G00013Context members
BWGOE1_RS04760
Partner locus tags
BWGOE1_RS04760
Partner old locus tags
BWGOE1_09660
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_070138835.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBWGOE1_RS04760Primary locus identifier stored in the genes table.
Old locus tagBWGOE1_09660Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LXLM01000017.1Sequence record reported by the local genomic context database.
Genomic interval9 858-10 916 nt1 059 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 858-10 916 ntGCF_001757785::NZ_LXLM01000017.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001757785::NZ_LXLM01000017.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LXLM01000017.1All displayed genes belong to this local TCS context.
Neighborhood span9 858-10 916 nt1 059 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 858 nt10 916 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BWGOE1_RS04760GCF_001757785#BWGOE1_RS04760
HKClassicCurrent focus
9 858-10 916 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001757785#BWGOE1_RS04760The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2789247
Simplified PFAM architecture for HKOC_2789247
PFAM domain coverage: 231 / 352 aa (65.6%)
1 aa352 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[57-109] | HisKA[120-186] | HATPase_c[238-348]
- Domain count: 3
- Matched identifier: HKOC_2789247
- Positioned domains: HAMP 57-109 ; HisKA 120-186 ; HATPase_c 238-348
Cluster members and taxonomy
Representative gene: GCF_001757785#BWGOE1_RS04760
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001757785
AssemblyASM175778v1 · Contighaploid
Genome composition5 613 531 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 116 · HK 64 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key