1 Response_reg#1
6-115 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:6:1.59e-36:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BWGOE1_RS01435
Response regulator OmpR family
Bacillus mycoides · GCF_001757785
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001757785#BWGOE1_RS01435Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 237 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-230 aa · 77 aa · 32.5% of protein
Raw token
Trans_reg_C:154:6.56e-35:230:77:77- Raw architecture: Response_reg:6:1.59e-36:115:111:111#Trans_reg_C:154:6.56e-35:230:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001757785::NZ_LXLM01000007.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4672-6388Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBWGOE1_02810RefSeq proteinWP_070168060.1
Context group ID
GCF_001757785::NZ_LXLM01000007.1::G00002Context members
BWGOE1_RS01430BWGOE1_RS01435
Partner locus tags
BWGOE1_RS01430BWGOE1_RS01435
Partner old locus tags
BWGOE1_02800BWGOE1_02810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_070168060.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBWGOE1_RS01435Primary locus identifier stored in the genes table.
Old locus tagBWGOE1_02810Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LXLM01000007.1Sequence record reported by the local genomic context database.
Genomic interval5 675-6 388 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 672-6 388 ntGCF_001757785::NZ_LXLM01000007.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001757785::NZ_LXLM01000007.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LXLM01000007.1All displayed genes belong to this local TCS context.
Neighborhood span4 672-6 388 nt1 717 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 672 nt6 388 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BWGOE1_RS01430GCF_001757785#BWGOE1_RS01430
HKClassic
4 672-5 685 nt · Reverse (-)
BWGOE1_RS01435GCF_001757785#BWGOE1_RS01435
RROmpRCurrent focus
5 675-6 388 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001757785#BWGOE1_RS01435The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0965810
Simplified PFAM architecture for RROC_0965810
PFAM domain coverage: 186 / 237 aa (78.5%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[154-230]
- Domain count: 2
- Matched identifier: RROC_0965810
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 154-230 ; Trans_reg_C 154-230
Cluster members and taxonomy
Representative gene: GCF_001757785#BWGOE1_RS01435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001757785
AssemblyASM175778v1 · Contighaploid
Genome composition5 613 531 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 116 · HK 64 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key