1 Response_reg#1
4-116 aa · 113 aa · 49.1% of protein
Raw token
Response_reg:4:1.34e-18:116:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BM72_RS07545
Response regulator LytTR family
Clostridioides difficile · GCF_001757615
ClassRRTypeLytTRLength230 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001757615#BM72_RS07545Stable P2CS identifier used across views.
GenomeGCF_001757615Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage206 / 230 aa (89.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-229 aa · 93 aa · 40.4% of protein
Raw token
LytTR:137:1.5e-22:229:98:98- Raw architecture: Response_reg:4:1.34e-18:116:116:111#LytTR:137:1.5e-22:229:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001757615::NZ_JFOI01000033.1::G00016
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span17061-17753Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBM72_04760RefSeq proteinWP_070114846.1
Context group ID
GCF_001757615::NZ_JFOI01000033.1::G00016Context members
BM72_RS07545
Partner locus tags
BM72_RS07545
Partner old locus tags
BM72_04760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_070114846.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBM72_RS07545Primary locus identifier stored in the genes table.
Old locus tagBM72_04760Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JFOI01000033.1Sequence record reported by the local genomic context database.
Genomic interval17 061-17 753 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span17 061-17 753 ntGCF_001757615::NZ_JFOI01000033.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001757615::NZ_JFOI01000033.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JFOI01000033.1All displayed genes belong to this local TCS context.
Neighborhood span17 061-17 753 nt693 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 061 nt17 753 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BM72_RS07545GCF_001757615#BM72_RS07545
RRLytTRCurrent focus
17 061-17 753 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001757615#BM72_RS07545The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1206952
Simplified PFAM architecture for RROC_1206952
PFAM domain coverage: 204 / 230 aa (88.7%)
1 aa230 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-116] | LytTR[138-228]
- Domain count: 2
- Matched identifier: RROC_1206952
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; LytTR 138-228 ; LytTR 138-228
Cluster members and taxonomy
Representative gene: GCF_001757615#BM72_RS07545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_001757615
AssemblyASM175761v1 · Contighaploid
Genome composition4 138 192 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 48 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key