1 Response_reg#1
4-115 aa · 112 aa · 49.3% of protein
Raw token
Response_reg:4:1.33e-31:115:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BJG09_RS07360
Response regulator NarL family
Streptococcus pasteurianus · GCF_001746975
ClassRRTypeNarLLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001746975#BJG09_RS07360Stable P2CS identifier used across views.
GenomeGCF_001746975Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 227 aa (73.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
158-211 aa · 54 aa · 23.8% of protein
Raw token
HTH_LUXR:158:1.56e-19:211:54:58- Raw architecture: Response_reg:4:1.33e-31:115:114:111#HTH_LUXR:158:1.56e-19:211:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001746975::NZ_LJPL01000006.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span30511-32516Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001746975::NZ_LJPL01000006.1::G00014Context members
BJG09_RS07355BJG09_RS07360
Partner locus tags
BJG09_RS07355BJG09_RS07360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003062946.1Primary protein accession used for annex mappings.
UniProt accessionA0A2I1YER7Primary UniProt accession resolved in the annex database.
UniProt IDA0A2I1YER7_STRMCDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBJG09_RS07360Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LJPL01000006.1Sequence record reported by the local genomic context database.
Genomic interval31 833-32 516 nt684 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span30 511-32 516 ntGCF_001746975::NZ_LJPL01000006.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001746975::NZ_LJPL01000006.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJPL01000006.1All displayed genes belong to this local TCS context.
Neighborhood span30 511-32 516 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 511 nt32 516 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BJG09_RS07355GCF_001746975#BJG09_RS07355
HKClassic
30 511-31 836 nt · Forward (+)
BJG09_RS07360GCF_001746975#BJG09_RS07360
RRNarLCurrent focus
31 833-32 516 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000146405#HMPREF9319_RS00500Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1354424
Simplified PFAM architecture for RROC_1354424
PFAM domain coverage: 166 / 227 aa (73.1%)
1 aa227 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-115] | GerE[158-211]
- Domain count: 2
- Matched identifier: RROC_1354424
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; GerE 158-211 ; GerE 158-211
Cluster members and taxonomy
Representative gene: GCF_000146405#HMPREF9319_RS00500
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 197 614 · GCF_001746975
AssemblyASM174697v1 · Contighaploid
Genome composition1 993 894 bp · 37,0% GCStreptococcus pasteurianus
Signal transduction countsGenes 28 · HK 13 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key