1 HAMP#1
144-211 aa · 68 aa · 15.5% of protein
Raw token
HAMP:144:0.00000000000651:211:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BJG09_RS04025
Histidine kinase, Classic
Streptococcus pasteurianus · GCF_001746975
ClassHKTypeClassicLength440 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001746975#BJG09_RS04025Stable P2CS identifier used across views.
GenomeGCF_001746975Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length440 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage228 / 440 aa (51.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa440 aa
Domain-by-domain annotation3 items
2 HisKA#2
231-296 aa · 66 aa · 15.0% of protein
Raw token
HisKA:231:0.000000186:296:66:643 HATPase_c#3
344-437 aa · 94 aa · 21.4% of protein
Raw token
HATPase_c:344:0.0000000000028:437:101:109- Raw architecture: HAMP:144:0.00000000000651:211:68:69#HisKA:231:0.000000186:296:66:64#HATPase_c:344:0.0000000000028:437:101:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001746975::NZ_LJPL01000002.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span215785-217760Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001746975::NZ_LJPL01000002.1::G00010Context members
BJG09_RS04020BJG09_RS04025
Partner locus tags
BJG09_RS04020BJG09_RS04025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003063986.1Primary protein accession used for annex mappings.
UniProt accessionA0A2I1YIH1Primary UniProt accession resolved in the annex database.
UniProt IDA0A2I1YIH1_STRMCDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBJG09_RS04025Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LJPL01000002.1Sequence record reported by the local genomic context database.
Genomic interval216 438-217 760 nt1 323 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span215 785-217 760 ntGCF_001746975::NZ_LJPL01000002.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001746975::NZ_LJPL01000002.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJPL01000002.1All displayed genes belong to this local TCS context.
Neighborhood span215 785-217 760 nt1 976 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
215 785 nt217 760 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BJG09_RS04020GCF_001746975#BJG09_RS04020
RROmpR
215 785-216 441 nt · Forward (+)
BJG09_RS04025GCF_001746975#BJG09_RS04025
HKClassicCurrent focus
216 438-217 760 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000146405#HMPREF9319_RS02890Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2071611
Simplified PFAM architecture for HKOC_2071611
PFAM domain coverage: 199 / 440 aa (45.2%)
1 aa440 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[162-212] | HisKA[232-295] | HATPase_c[343-426]
- Domain count: 3
- Matched identifier: HKOC_2071611
- Positioned domains: HAMP 162-212 ; HisKA 232-295 ; HATPase_c 343-426
Cluster members and taxonomy
Representative gene: GCF_000146405#HMPREF9319_RS02890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 197 614 · GCF_001746975
AssemblyASM174697v1 · Contighaploid
Genome composition1 993 894 bp · 37,0% GCStreptococcus pasteurianus
Signal transduction countsGenes 28 · HK 13 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key