1 Response_reg#1
3-112 aa · 110 aa · 50.5% of protein
Raw token
Response_reg:3:1.76e-29:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BJG09_RS04020
Response regulator OmpR family
Streptococcus pasteurianus · GCF_001746975
ClassRRTypeOmpRLength218 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001746975#BJG09_RS04020Stable P2CS identifier used across views.
GenomeGCF_001746975Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 218 aa (83.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-215 aa · 73 aa · 33.5% of protein
Raw token
Trans_reg_C:143:1.4e-24:215:78:77- Raw architecture: Response_reg:3:1.76e-29:112:111:111#Trans_reg_C:143:1.4e-24:215:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001746975::NZ_LJPL01000002.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span215785-217760Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001746975::NZ_LJPL01000002.1::G00010Context members
BJG09_RS04020BJG09_RS04025
Partner locus tags
BJG09_RS04020BJG09_RS04025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003063985.1Primary protein accession used for annex mappings.
UniProt accessionA0A2I1YIM0Primary UniProt accession resolved in the annex database.
UniProt IDA0A2I1YIM0_STRMCDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBJG09_RS04020Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LJPL01000002.1Sequence record reported by the local genomic context database.
Genomic interval215 785-216 441 nt657 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span215 785-217 760 ntGCF_001746975::NZ_LJPL01000002.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001746975::NZ_LJPL01000002.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJPL01000002.1All displayed genes belong to this local TCS context.
Neighborhood span215 785-217 760 nt1 976 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
215 785 nt217 760 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BJG09_RS04020GCF_001746975#BJG09_RS04020
RROmpRCurrent focus
215 785-216 441 nt · Forward (+)
BJG09_RS04025GCF_001746975#BJG09_RS04025
HKClassic
216 438-217 760 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000146405#HMPREF9319_RS02885Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1812235
Simplified PFAM architecture for RROC_1812235
PFAM domain coverage: 182 / 218 aa (83.5%)
1 aa218 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[143-215]
- Domain count: 2
- Matched identifier: RROC_1812235
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 143-215 ; Trans_reg_C 143-215
Cluster members and taxonomy
Representative gene: GCF_000146405#HMPREF9319_RS02885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 197 614 · GCF_001746975
AssemblyASM174697v1 · Contighaploid
Genome composition1 993 894 bp · 37,0% GCStreptococcus pasteurianus
Signal transduction countsGenes 28 · HK 13 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key