1 Response_reg#1
6-113 aa · 108 aa · 49.1% of protein
Raw token
Response_reg:6:4.48e-22:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BJG09_RS02375
Response regulator OmpR family
Streptococcus pasteurianus · GCF_001746975
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001746975#BJG09_RS02375Stable P2CS identifier used across views.
GenomeGCF_001746975Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 220 aa (81.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-219 aa · 72 aa · 32.7% of protein
Raw token
Trans_reg_C:148:1.92e-27:219:74:77- Raw architecture: Response_reg:6:4.48e-22:113:110:111#Trans_reg_C:148:1.92e-27:219:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001746975::NZ_LJPL01000001.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span502707-503369Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001746975::NZ_LJPL01000001.1::G00006Context members
BJG09_RS02375
Partner locus tags
BJG09_RS02375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_172456417.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBJG09_RS02375Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LJPL01000001.1Sequence record reported by the local genomic context database.
Genomic interval502 707-503 369 nt663 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span502 707-503 369 ntGCF_001746975::NZ_LJPL01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001746975::NZ_LJPL01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJPL01000001.1All displayed genes belong to this local TCS context.
Neighborhood span502 707-503 369 nt663 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
502 707 nt503 369 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BJG09_RS02375GCF_001746975#BJG09_RS02375
RROmpRCurrent focus
502 707-503 369 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000270165#SGPB_RS04935Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1723607
Simplified PFAM architecture for RROC_1723607
PFAM domain coverage: 181 / 220 aa (82.3%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-113] | Trans_reg_C[147-219]
- Domain count: 2
- Matched identifier: RROC_1723607
- Positioned domains: Response_reg 6-113 ; Response_reg 6-113 ; Trans_reg_C 147-219 ; Trans_reg_C 147-219
Cluster members and taxonomy
Representative gene: GCF_000270165#SGPB_RS04935
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 197 614 · GCF_001746975
AssemblyASM174697v1 · Contighaploid
Genome composition1 993 894 bp · 37,0% GCStreptococcus pasteurianus
Signal transduction countsGenes 28 · HK 13 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key