1 HisKA#1
290-352 aa · 63 aa · 12.6% of protein
Raw token
HisKA:290:4.58e-17:352:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BJG09_RS00260
Histidine kinase, Classic
Streptococcus pasteurianus · GCF_001746975
ClassHKTypeClassicLength501 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001746975#BJG09_RS00260Stable P2CS identifier used across views.
GenomeGCF_001746975Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length501 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 501 aa (33.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa501 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
399-501 aa · 103 aa · 20.6% of protein
Raw token
HATPase_c:399:3.61e-26:501:108:109- Raw architecture: HisKA:290:4.58e-17:352:63:64#HATPase_c:399:3.61e-26:501:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001746975::NZ_LJPL01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span53681-55850Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001746975::NZ_LJPL01000001.1::G00001Context members
BJG09_RS00255BJG09_RS00260
Partner locus tags
BJG09_RS00255BJG09_RS00260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_172456432.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW6YM10Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW6YM10_9STREDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBJG09_RS00260Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LJPL01000001.1Sequence record reported by the local genomic context database.
Genomic interval54 345-55 850 nt1 506 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span53 681-55 850 ntGCF_001746975::NZ_LJPL01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001746975::NZ_LJPL01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJPL01000001.1All displayed genes belong to this local TCS context.
Neighborhood span53 681-55 850 nt2 170 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 681 nt55 850 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BJG09_RS00255GCF_001746975#BJG09_RS00255
RROmpR
53 681-54 373 nt · Forward (+)
BJG09_RS00260GCF_001746975#BJG09_RS00260
HKClassicCurrent focus
54 345-55 850 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433675#DW244_RS02685Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1429150
Simplified PFAM architecture for HKOC_1429150
PFAM domain coverage: 163 / 510 aa (32.0%)
1 aa510 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[300-361] | HATPase_c[409-509]
- Domain count: 2
- Matched identifier: HKOC_1429150
- Positioned domains: HisKA 300-361 ; HATPase_c 409-509
Cluster members and taxonomy
Representative gene: GCF_003433675#DW244_RS02685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 197 614 · GCF_001746975
AssemblyASM174697v1 · Contighaploid
Genome composition1 993 894 bp · 37,0% GCStreptococcus pasteurianus
Signal transduction countsGenes 28 · HK 13 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key