1 HAMP#1
44-114 aa · 71 aa · 20.6% of protein
Raw token
HAMP:44:3.33e-18:114:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BL1206_RS03435
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_001725985
ClassHKTypeClassicLength344 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001725985#BL1206_RS03435Stable P2CS identifier used across views.
GenomeGCF_001725985Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length344 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 344 aa (71.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
118-182 aa · 65 aa · 18.9% of protein
Raw token
HisKA:118:1.34e-16:182:65:643 HATPase_c#3
227-337 aa · 111 aa · 32.3% of protein
Raw token
HATPase_c:227:2.01e-21:337:112:109- Raw architecture: HAMP:44:3.33e-18:114:71:69#HisKA:118:1.34e-16:182:65:64#HATPase_c:227:2.01e-21:337:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001725985::NZ_CP016019.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span809629-811423Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBL1206_0676RefSeq proteinWP_010081614.1
Context group ID
GCF_001725985::NZ_CP016019.1::G00003Context members
BL1206_RS03435BL1206_RS03440
Partner locus tags
BL1206_RS03435BL1206_RS03440
Partner old locus tags
BL1206_0676BL1206_0677
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_010081614.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBL1206_RS03435Primary locus identifier stored in the genes table.
Old locus tagBL1206_0676Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP016019.1Sequence record reported by the local genomic context database.
Genomic interval809 629-810 663 nt1 035 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span809 629-811 423 ntGCF_001725985::NZ_CP016019.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001725985::NZ_CP016019.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP016019.1All displayed genes belong to this local TCS context.
Neighborhood span809 629-811 423 nt1 795 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
809 629 nt811 423 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BL1206_RS03435GCF_001725985#BL1206_RS03435
HKClassicCurrent focus
809 629-810 663 nt · Reverse (-)
BL1206_RS03440GCF_001725985#BL1206_RS03440
RROmpR
810 701-811 423 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003135#HMPREF0175_RS08250Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2764997
Simplified PFAM architecture for HKOC_2764997
PFAM domain coverage: 231 / 357 aa (64.7%)
1 aa357 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[73-126] | HisKA[131-195] | HATPase_c[240-351]
- Domain count: 3
- Matched identifier: HKOC_2764997
- Positioned domains: HAMP 73-126 ; HisKA 131-195 ; HATPase_c 240-351
Cluster members and taxonomy
Representative gene: GCF_000003135#HMPREF0175_RS08250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_001725985
AssemblyASM172598v1 · Complete Genomehaploid
Genome composition2 421 287 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 19 · HK 10 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key