1 HisKA#1
182-240 aa · 59 aa · 15.0% of protein
Raw token
HisKA:182:0.0000000000000293:240:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DCP99_RS11890
Histidine kinase, Classic
Clostridioides difficile · GCF_001704805
ClassHKTypeClassicLength393 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001704805#DCP99_RS11890Stable P2CS identifier used across views.
GenomeGCF_001704805Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length393 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 393 aa (40.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa393 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
293-391 aa · 99 aa · 25.2% of protein
Raw token
HATPase_c:293:2.63e-18:391:100:109- Raw architecture: HisKA:182:0.0000000000000293:240:59:64#HATPase_c:293:2.63e-18:391:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001704805::NZ_MBGB02000017.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span674-2517Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCD45_RS11890RefSeq proteinWP_021374427.1
Context group ID
GCF_001704805::NZ_MBGB02000017.1::G00011Context members
DCP99_RS11885DCP99_RS11890
Partner locus tags
DCP99_RS11885DCP99_RS11890
Partner old locus tags
BCD45_RS11885BCD45_RS11890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021374427.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDCP99_RS11890Primary locus identifier stored in the genes table.
Old locus tagBCD45_RS11890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MBGB02000017.1Sequence record reported by the local genomic context database.
Genomic interval1 336-2 517 nt1 182 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span674-2 517 ntGCF_001704805::NZ_MBGB02000017.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001704805::NZ_MBGB02000017.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MBGB02000017.1All displayed genes belong to this local TCS context.
Neighborhood span674-2 517 nt1 844 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
674 nt2 517 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DCP99_RS11885GCF_001704805#DCP99_RS11885
RROmpR
674-1 336 nt · Forward (+)
DCP99_RS11890GCF_001704805#DCP99_RS11890
HKClassicCurrent focus
1 336-2 517 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449185#QCW_RS02425Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2503583
Simplified PFAM architecture for HKOC_2503583
PFAM domain coverage: 162 / 393 aa (41.2%)
1 aa393 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[179-240] | HATPase_c[292-391]
- Domain count: 2
- Matched identifier: HKOC_2503583
- Positioned domains: HisKA 179-240 ; HATPase_c 292-391
Cluster members and taxonomy
Representative gene: GCF_000449185#QCW_RS02425
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 38 over 38 total members. Page 1 / 1.
GCF_000449185#QCW_RS02425 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_001704805
AssemblyASM170480v2 · Contighaploid
Genome composition4 137 970 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 92 · HK 41 · RR 49CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key