1 Response_reg#1
6-110 aa · 105 aa · 19.2% of protein
Raw token
Response_reg:6:6.61e-27:110:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DCQ01_RS09905
Response regulator, RpfG family
Clostridioides difficile · GCF_001704795
ClassRRTypeRpfGLength546 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001704795#DCQ01_RS09905Stable P2CS identifier used across views.
GenomeGCF_001704795Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regHDGGDEF
Protein length546 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage356 / 546 aa (65.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HD,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa546 aa
Domain-by-domain annotation3 items
2 HD#2
195-300 aa · 106 aa · 19.4% of protein
Raw token
HD:195:0.00000000000851:300:106:1103 GGDEF#3
384-528 aa · 145 aa · 26.6% of protein
Raw token
GGDEF:384:2.49e-39:528:162:160- Raw architecture: Response_reg:6:6.61e-27:110:106:111#HD:195:0.00000000000851:300:106:110#GGDEF:384:2.49e-39:528:162:160
- Domain description: 1 Response_reg,1 HD,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001704795::NZ_MBGC02000014.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span77700-82268Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCD43_RS09905RefSeq proteinWP_065977644.1
Context group ID
GCF_001704795::NZ_MBGC02000014.1::G00015Context members
DCQ01_RS09895DCQ01_RS09905
Partner locus tags
DCQ01_RS09895DCQ01_RS09905
Partner old locus tags
BCD43_RS09895BCD43_RS09905
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_065977644.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDCQ01_RS09905Primary locus identifier stored in the genes table.
Old locus tagBCD43_RS09905Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MBGC02000014.1Sequence record reported by the local genomic context database.
Genomic interval80 628-82 268 nt1 641 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span77 700-82 268 ntGCF_001704795::NZ_MBGC02000014.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001704795::NZ_MBGC02000014.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MBGC02000014.1All displayed genes belong to this local TCS context.
Neighborhood span77 700-82 268 nt4 569 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
77 700 nt82 268 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DCQ01_RS09895GCF_001704795#DCQ01_RS09895
HKHybrid
77 700-80 258 nt · Reverse (-)
DCQ01_RS09905GCF_001704795#DCQ01_RS09905
RRRpfGCurrent focus
80 628-82 268 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001704795#DCQ01_RS09905The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_5 + GGDEF3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0079518
Simplified PFAM architecture for RROC_0079518
PFAM domain coverage: 384 / 546 aa (70.3%)
1 aa546 aa
Response_regHD_5GGDEF
- Simplified architecture: Response_reg + HD_5 + GGDEF
- Raw architecture: Response_reg[6-117] | HD_5[191-320] | GGDEF[384-525]
- Domain count: 3
- Matched identifier: RROC_0079518
- Positioned domains: Response_reg 6-117 ; Response_reg 6-117 ; HD_5 191-320 ; HD_5 191-320 ; GGDEF 384-525 ; GGDEF 384-525
Cluster members and taxonomy
Representative gene: GCF_001704795#DCQ01_RS09905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_001704795
AssemblyASM170479v2 · Contighaploid
Genome composition3 987 361 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 92 · HK 41 · RR 49CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key