1 Response_reg#1
14-120 aa · 107 aa · 43.9% of protein
Raw token
Response_reg:14:4.42e-19:120:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DCQ03_RS18460
Response regulator LytTR family
Clostridioides difficile · GCF_001704755
ClassRRTypeLytTRLength244 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001704755#DCQ03_RS18460Stable P2CS identifier used across views.
GenomeGCF_001704755Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 244 aa (79.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa244 aa
Domain-by-domain annotation2 items
2 LytTR#2
149-235 aa · 87 aa · 35.7% of protein
Raw token
LytTR:149:1.6e-18:235:93:98- Raw architecture: Response_reg:14:4.42e-19:120:110:111#LytTR:149:1.6e-18:235:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001704755::NZ_MBMH02000746.1::G00043
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-736Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCD44_RS18450RefSeq proteinWP_237672995.1
Context group ID
GCF_001704755::NZ_MBMH02000746.1::G00043Context members
DCQ03_RS18460
Partner locus tags
DCQ03_RS18460
Partner old locus tags
BCD44_RS18450
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_237672995.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDCQ03_RS18460Primary locus identifier stored in the genes table.
Old locus tagBCD44_RS18450Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MBMH02000746.1Sequence record reported by the local genomic context database.
Genomic interval1-736 nt736 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-736 ntGCF_001704755::NZ_MBMH02000746.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001704755::NZ_MBMH02000746.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MBMH02000746.1All displayed genes belong to this local TCS context.
Neighborhood span1-736 nt736 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt736 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DCQ03_RS18460GCF_001704755#DCQ03_RS18460
RRLytTRCurrent focus
1-736 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033840445#SIK48_RS15635Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0800133
Simplified PFAM architecture for RROC_0800133
PFAM domain coverage: 197 / 245 aa (80.4%)
1 aa245 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[15-125] | LytTR[150-235]
- Domain count: 2
- Matched identifier: RROC_0800133
- Positioned domains: Response_reg 15-125 ; LytTR 150-235
Cluster members and taxonomy
Representative gene: GCF_033840445#SIK48_RS15635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_001704755
AssemblyASM170475v2 · Contighaploid
Genome composition3 975 153 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 89 · HK 41 · RR 47CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key