1 SBP_bac_3#1
58-278 aa · 221 aa · 33.3% of protein
Raw token
SBP_bac_3:58:5.81e-41:278:230:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DCQ03_RS14720
Histidine kinase, Classic
Clostridioides difficile · GCF_001704755
ClassHKTypeClassicLength664 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001704755#DCQ03_RS14720Stable P2CS identifier used across views.
GenomeGCF_001704755Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_c
Protein length664 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage386 / 664 aa (58.1%)Merged over positioned domains only.
Domain description1 SBP_bac_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa664 aa
Domain-by-domain annotation3 items
2 HisKA#2
446-508 aa · 63 aa · 9.5% of protein
Raw token
HisKA:446:0.000000000000116:508:63:643 HATPase_c#3
557-658 aa · 102 aa · 15.4% of protein
Raw token
HATPase_c:557:1.25e-23:658:103:109- Raw architecture: SBP_bac_3:58:5.81e-41:278:230:224#HisKA:446:0.000000000000116:508:63:64#HATPase_c:557:1.25e-23:658:103:109
- Domain description: 1 SBP_bac_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001704755::NZ_MBMH02000385.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span156-3472Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCD44_RS14710RefSeq proteinWP_066024717.1
Context group ID
GCF_001704755::NZ_MBMH02000385.1::G00032Context members
DCQ03_RS14715DCQ03_RS14720
Partner locus tags
DCQ03_RS14715DCQ03_RS14720
Partner old locus tags
BCD44_RS14705BCD44_RS14710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_066024717.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDCQ03_RS14720Primary locus identifier stored in the genes table.
Old locus tagBCD44_RS14710Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MBMH02000385.1Sequence record reported by the local genomic context database.
Genomic interval1 478-3 472 nt1 995 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span156-3 472 ntGCF_001704755::NZ_MBMH02000385.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001704755::NZ_MBMH02000385.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MBMH02000385.1All displayed genes belong to this local TCS context.
Neighborhood span156-3 472 nt3 317 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
156 nt3 472 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DCQ03_RS14715GCF_001704755#DCQ03_RS14715
RRNtrC
156-1 478 nt · Reverse (-)
DCQ03_RS14720GCF_001704755#DCQ03_RS14720
HKClassicCurrent focus
1 478-3 472 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001704755#DCQ03_RS14720The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0860787
Simplified PFAM architecture for HKOC_0860787
PFAM domain coverage: 385 / 664 aa (58.0%)
1 aa664 aa
SBP_bac_3HisKAHATPase_c
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c
- Raw architecture: SBP_bac_3[60-277] | HisKA[448-509] | HATPase_c[555-659]
- Domain count: 3
- Matched identifier: HKOC_0860787
- Positioned domains: SBP_bac_3 60-277 ; HisKA 448-509 ; HATPase_c 555-659
Cluster members and taxonomy
Representative gene: GCF_001704755#DCQ03_RS14720
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 4 over 4 total members. Page 1 / 1.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_001704755
AssemblyASM170475v2 · Contighaploid
Genome composition3 975 153 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 89 · HK 41 · RR 47CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key