1 HisKA_3#1
62-125 aa · 64 aa · 24.5% of protein
Raw token
HisKA_3:62:1.1e-19:125:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DCQ03_RS12700
Histidine kinase, Classic
Clostridioides difficile · GCF_001704755
ClassHKTypeClassicLength261 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001704755#DCQ03_RS12700Stable P2CS identifier used across views.
GenomeGCF_001704755Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length261 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 261 aa (57.1%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa261 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
168-252 aa · 85 aa · 32.6% of protein
Raw token
HATPase_c:168:0.0000000000663:252:104:109- Raw architecture: HisKA_3:62:1.1e-19:125:65:68#HATPase_c:168:0.0000000000663:252:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001704755::NZ_MBMH02000276.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3285-4711Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCD44_RS12695RefSeq proteinWP_103013616.1
Context group ID
GCF_001704755::NZ_MBMH02000276.1::G00026Context members
DCQ03_RS12695DCQ03_RS12700
Partner locus tags
DCQ03_RS12695DCQ03_RS12700
Partner old locus tags
BCD44_RS12690BCD44_RS12695
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_103013616.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDCQ03_RS12700Primary locus identifier stored in the genes table.
Old locus tagBCD44_RS12695Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MBMH02000276.1Sequence record reported by the local genomic context database.
Genomic interval3 925-4 711 nt787 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 285-4 711 ntGCF_001704755::NZ_MBMH02000276.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001704755::NZ_MBMH02000276.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MBMH02000276.1All displayed genes belong to this local TCS context.
Neighborhood span3 285-4 711 nt1 427 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 285 nt4 711 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DCQ03_RS12695GCF_001704755#DCQ03_RS12695
RRNarL
3 285-3 932 nt · Reverse (-)
DCQ03_RS12700GCF_001704755#DCQ03_RS12700
HKClassicCurrent focus
3 925-4 711 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449185#QCW_RS06390Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2550383
Simplified PFAM architecture for HKOC_2550383
PFAM domain coverage: 149 / 387 aa (38.5%)
1 aa387 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[188-251] | HATPase_c[294-378]
- Domain count: 2
- Matched identifier: HKOC_2550383
- Positioned domains: HisKA_3 188-251 ; HATPase_c 294-378
Cluster members and taxonomy
Representative gene: GCF_000449185#QCW_RS06390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_001704755
AssemblyASM170475v2 · Contighaploid
Genome composition3 975 153 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 89 · HK 41 · RR 47CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key