1 HisKA#1
449-514 aa · 66 aa · 9.8% of protein
Raw token
HisKA:449:0.00000000539:514:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DCQ03_RS08650
Histidine kinase, Classic
Clostridioides difficile · GCF_001704755
ClassHKTypeClassicLength671 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_001704755#DCQ03_RS08650Stable P2CS identifier used across views.
GenomeGCF_001704755Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length671 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 671 aa (25.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa671 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
567-668 aa · 102 aa · 15.2% of protein
Raw token
HATPase_c:567:1.61e-29:668:102:109- Raw architecture: HisKA:449:0.00000000539:514:66:64#HATPase_c:567:1.61e-29:668:102:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_001704755::NZ_MBMH02000132.1::G00006
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span267-3761Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCD44_RS08635RefSeq proteinWP_162495456.1
Context group ID
GCF_001704755::NZ_MBMH02000132.1::G00006Context members
DCQ03_RS08645DCQ03_RS08650DCQ03_RS08655
Partner locus tags
DCQ03_RS08645DCQ03_RS08650DCQ03_RS08655
Partner old locus tags
BCD44_RS08630BCD44_RS08635BCD44_RS08640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_162495456.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDCQ03_RS08650Primary locus identifier stored in the genes table.
Old locus tagBCD44_RS08635Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MBMH02000132.1Sequence record reported by the local genomic context database.
Genomic interval1 016-3 031 nt2 016 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span267-3 761 ntGCF_001704755::NZ_MBMH02000132.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001704755::NZ_MBMH02000132.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MBMH02000132.1All displayed genes belong to this local TCS context.
Neighborhood span267-3 761 nt3 495 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
267 nt3 761 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DCQ03_RS08645GCF_001704755#DCQ03_RS08645
RROmpR
267-944 nt · Forward (+)
DCQ03_RS08650GCF_001704755#DCQ03_RS08650
HKClassicCurrent focus
1 016-3 031 nt · Forward (+)
DCQ03_RS08655GCF_001704755#DCQ03_RS08655
RROmpR
3 081-3 761 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001704755#DCQ03_RS08650The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0842873
Simplified PFAM architecture for HKOC_0842873
PFAM domain coverage: 168 / 671 aa (25.0%)
1 aa671 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[450-514] | HATPase_c[565-667]
- Domain count: 2
- Matched identifier: HKOC_0842873
- Positioned domains: HisKA 450-514 ; HATPase_c 565-667
Cluster members and taxonomy
Representative gene: GCF_001704755#DCQ03_RS08650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_001704755
AssemblyASM170475v2 · Contighaploid
Genome composition3 975 153 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 89 · HK 41 · RR 47CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key