1 Response_reg#1
1-56 aa · 56 aa · 30.3% of protein
Raw token
Response_reg:1:0.0000000000000846:56:58:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAD22_RS08165
Response regulator LytTR family
Bifidobacterium longum subsp. longum · GCF_001686245
ClassRRTypeLytTRLength185 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001686245#BAD22_RS08165Stable P2CS identifier used across views.
GenomeGCF_001686245Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length185 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage142 / 185 aa (76.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa185 aa
Domain-by-domain annotation2 items
2 LytTR#2
86-171 aa · 86 aa · 46.5% of protein
Raw token
LytTR:86:4.34e-20:171:91:98- Raw architecture: Response_reg:1:0.0000000000000846:56:58:111#LytTR:86:4.34e-20:171:91:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001686245::NZ_BCYM01000078.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span791-1348Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001686245::NZ_BCYM01000078.1::G00011Context members
BAD22_RS08165
Partner locus tags
BAD22_RS08165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_269085291.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAD22_RS08165Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BCYM01000078.1Sequence record reported by the local genomic context database.
Genomic interval791-1 348 nt558 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span791-1 348 ntGCF_001686245::NZ_BCYM01000078.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001686245::NZ_BCYM01000078.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BCYM01000078.1All displayed genes belong to this local TCS context.
Neighborhood span791-1 348 nt558 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
791 nt1 348 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BAD22_RS08165GCF_001686245#BAD22_RS08165
RRLytTRCurrent focus
791-1 348 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001686245#BAD22_RS08165The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2178041
Simplified PFAM architecture for RROC_2178041
PFAM domain coverage: 145 / 185 aa (78.4%)
1 aa185 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[1-59] | LytTR[86-171]
- Domain count: 2
- Matched identifier: RROC_2178041
- Positioned domains: Response_reg 1-59 ; Response_reg 1-59 ; LytTR 86-171 ; LytTR 86-171
Cluster members and taxonomy
Representative gene: GCF_001686245#BAD22_RS08165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_001686245
AssemblyASM168624v1 · Contighaploid
Genome composition2 372 714 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 22 · HK 11 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key